miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11289 3' -58.4 NC_003083.1 + 73797 1.1 0.001321
Target:  5'- cCCGCGCCCGUUGCAACAACGCCCGCGu -3'
miRNA:   3'- -GGCGCGGGCAACGUUGUUGCGGGCGC- -5'
11289 3' -58.4 NC_003083.1 + 88088 0.78 0.208551
Target:  5'- gCCGCGCCgGUcguuacccucGCGGCAccGCGCCCGCu -3'
miRNA:   3'- -GGCGCGGgCAa---------CGUUGU--UGCGGGCGc -5'
11289 3' -58.4 NC_003083.1 + 1678 0.74 0.348572
Target:  5'- -aGUGCCCGUUGCAGCugu-CCUGCGu -3'
miRNA:   3'- ggCGCGGGCAACGUUGuugcGGGCGC- -5'
11289 3' -58.4 NC_003083.1 + 73731 0.73 0.37217
Target:  5'- aCGCGUuuGgcGCGACGuUGCCCGCc -3'
miRNA:   3'- gGCGCGggCaaCGUUGUuGCGGGCGc -5'
11289 3' -58.4 NC_003083.1 + 16583 0.73 0.388496
Target:  5'- -aGCGUCCG-UGCAgucGCggUGUCCGCGg -3'
miRNA:   3'- ggCGCGGGCaACGU---UGuuGCGGGCGC- -5'
11289 3' -58.4 NC_003083.1 + 104793 0.73 0.402738
Target:  5'- aCGCGCCCGUgguuuuuguaUGUGauagugcgucagucACAACGUCCGCc -3'
miRNA:   3'- gGCGCGGGCA----------ACGU--------------UGUUGCGGGCGc -5'
11289 3' -58.4 NC_003083.1 + 17647 0.72 0.413849
Target:  5'- aCCGCGCCgGgcaaaCGACGACGCuCUGCa -3'
miRNA:   3'- -GGCGCGGgCaac--GUUGUUGCG-GGCGc -5'
11289 3' -58.4 NC_003083.1 + 112805 0.72 0.413849
Target:  5'- aCGCGCgaUUGUUaaCAACAACGCCCGCu -3'
miRNA:   3'- gGCGCG--GGCAAc-GUUGUUGCGGGCGc -5'
11289 3' -58.4 NC_003083.1 + 97540 0.71 0.49559
Target:  5'- aCCGUGCCC---GCAACcgcCGCCCGUa -3'
miRNA:   3'- -GGCGCGGGcaaCGUUGuu-GCGGGCGc -5'
11289 3' -58.4 NC_003083.1 + 74081 0.71 0.513791
Target:  5'- gCGCGUUCGcUUGCAGCGACucaaccaGCuuGCGg -3'
miRNA:   3'- gGCGCGGGC-AACGUUGUUG-------CGggCGC- -5'
11289 3' -58.4 NC_003083.1 + 47268 0.69 0.59394
Target:  5'- uCCGCGCaCGUauacaauaucgUGCAACGaaGCGuUCCGCGu -3'
miRNA:   3'- -GGCGCGgGCA-----------ACGUUGU--UGC-GGGCGC- -5'
11289 3' -58.4 NC_003083.1 + 18326 0.69 0.614135
Target:  5'- -gGCuuCCgCGUUGaCAACAGCGCCgGCGu -3'
miRNA:   3'- ggCGc-GG-GCAAC-GUUGUUGCGGgCGC- -5'
11289 3' -58.4 NC_003083.1 + 100613 0.69 0.614135
Target:  5'- aCGCGCauGUgcGCAACGGCGUgCGCa -3'
miRNA:   3'- gGCGCGggCAa-CGUUGUUGCGgGCGc -5'
11289 3' -58.4 NC_003083.1 + 94677 0.69 0.624256
Target:  5'- aCGCGCCUugaaUGCGACAACGauuCCGaCGa -3'
miRNA:   3'- gGCGCGGGca--ACGUUGUUGCg--GGC-GC- -5'
11289 3' -58.4 NC_003083.1 + 11784 0.69 0.634382
Target:  5'- gCCGUaCCCGUUGUugAugAGCGCCCu-- -3'
miRNA:   3'- -GGCGcGGGCAACG--UugUUGCGGGcgc -5'
11289 3' -58.4 NC_003083.1 + 29027 0.68 0.644508
Target:  5'- aCCGCGCUuuucgCGUUGCAACAuccauccgAUGCCacuuuucugaUGCGg -3'
miRNA:   3'- -GGCGCGG-----GCAACGUUGU--------UGCGG----------GCGC- -5'
11289 3' -58.4 NC_003083.1 + 28332 0.68 0.654623
Target:  5'- -gGCgGCCCGgggGCAAUGcACGCgCGCGg -3'
miRNA:   3'- ggCG-CGGGCaa-CGUUGU-UGCGgGCGC- -5'
11289 3' -58.4 NC_003083.1 + 2009 0.68 0.66573
Target:  5'- aCGCGUagaaauugcggcggaUCGUcacauguuggaggcUGCGGCGACGCCgGCGu -3'
miRNA:   3'- gGCGCG---------------GGCA--------------ACGUUGUUGCGGgCGC- -5'
11289 3' -58.4 NC_003083.1 + 74189 0.68 0.668754
Target:  5'- aCGCGgCCGuUUGCGcguuguuuauauuguGCAACauGUCCGCGg -3'
miRNA:   3'- gGCGCgGGC-AACGU---------------UGUUG--CGGGCGC- -5'
11289 3' -58.4 NC_003083.1 + 102469 0.67 0.704771
Target:  5'- gCCGCGaCCUGUcGCAGacucCAACGCCguguuaGCGc -3'
miRNA:   3'- -GGCGC-GGGCAaCGUU----GUUGCGGg-----CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.