Results 21 - 35 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11289 | 3' | -58.4 | NC_003083.1 | + | 11784 | 0.69 | 0.634382 |
Target: 5'- gCCGUaCCCGUUGUugAugAGCGCCCu-- -3' miRNA: 3'- -GGCGcGGGCAACG--UugUUGCGGGcgc -5' |
|||||||
11289 | 3' | -58.4 | NC_003083.1 | + | 94677 | 0.69 | 0.624256 |
Target: 5'- aCGCGCCUugaaUGCGACAACGauuCCGaCGa -3' miRNA: 3'- gGCGCGGGca--ACGUUGUUGCg--GGC-GC- -5' |
|||||||
11289 | 3' | -58.4 | NC_003083.1 | + | 18326 | 0.69 | 0.614135 |
Target: 5'- -gGCuuCCgCGUUGaCAACAGCGCCgGCGu -3' miRNA: 3'- ggCGc-GG-GCAAC-GUUGUUGCGGgCGC- -5' |
|||||||
11289 | 3' | -58.4 | NC_003083.1 | + | 100613 | 0.69 | 0.614135 |
Target: 5'- aCGCGCauGUgcGCAACGGCGUgCGCa -3' miRNA: 3'- gGCGCGggCAa-CGUUGUUGCGgGCGc -5' |
|||||||
11289 | 3' | -58.4 | NC_003083.1 | + | 47268 | 0.69 | 0.59394 |
Target: 5'- uCCGCGCaCGUauacaauaucgUGCAACGaaGCGuUCCGCGu -3' miRNA: 3'- -GGCGCGgGCA-----------ACGUUGU--UGC-GGGCGC- -5' |
|||||||
11289 | 3' | -58.4 | NC_003083.1 | + | 74081 | 0.71 | 0.513791 |
Target: 5'- gCGCGUUCGcUUGCAGCGACucaaccaGCuuGCGg -3' miRNA: 3'- gGCGCGGGC-AACGUUGUUG-------CGggCGC- -5' |
|||||||
11289 | 3' | -58.4 | NC_003083.1 | + | 97540 | 0.71 | 0.49559 |
Target: 5'- aCCGUGCCC---GCAACcgcCGCCCGUa -3' miRNA: 3'- -GGCGCGGGcaaCGUUGuu-GCGGGCGc -5' |
|||||||
11289 | 3' | -58.4 | NC_003083.1 | + | 112805 | 0.72 | 0.413849 |
Target: 5'- aCGCGCgaUUGUUaaCAACAACGCCCGCu -3' miRNA: 3'- gGCGCG--GGCAAc-GUUGUUGCGGGCGc -5' |
|||||||
11289 | 3' | -58.4 | NC_003083.1 | + | 17647 | 0.72 | 0.413849 |
Target: 5'- aCCGCGCCgGgcaaaCGACGACGCuCUGCa -3' miRNA: 3'- -GGCGCGGgCaac--GUUGUUGCG-GGCGc -5' |
|||||||
11289 | 3' | -58.4 | NC_003083.1 | + | 104793 | 0.73 | 0.402738 |
Target: 5'- aCGCGCCCGUgguuuuuguaUGUGauagugcgucagucACAACGUCCGCc -3' miRNA: 3'- gGCGCGGGCA----------ACGU--------------UGUUGCGGGCGc -5' |
|||||||
11289 | 3' | -58.4 | NC_003083.1 | + | 16583 | 0.73 | 0.388496 |
Target: 5'- -aGCGUCCG-UGCAgucGCggUGUCCGCGg -3' miRNA: 3'- ggCGCGGGCaACGU---UGuuGCGGGCGC- -5' |
|||||||
11289 | 3' | -58.4 | NC_003083.1 | + | 73731 | 0.73 | 0.37217 |
Target: 5'- aCGCGUuuGgcGCGACGuUGCCCGCc -3' miRNA: 3'- gGCGCGggCaaCGUUGUuGCGGGCGc -5' |
|||||||
11289 | 3' | -58.4 | NC_003083.1 | + | 1678 | 0.74 | 0.348572 |
Target: 5'- -aGUGCCCGUUGCAGCugu-CCUGCGu -3' miRNA: 3'- ggCGCGGGCAACGUUGuugcGGGCGC- -5' |
|||||||
11289 | 3' | -58.4 | NC_003083.1 | + | 88088 | 0.78 | 0.208551 |
Target: 5'- gCCGCGCCgGUcguuacccucGCGGCAccGCGCCCGCu -3' miRNA: 3'- -GGCGCGGgCAa---------CGUUGU--UGCGGGCGc -5' |
|||||||
11289 | 3' | -58.4 | NC_003083.1 | + | 73797 | 1.1 | 0.001321 |
Target: 5'- cCCGCGCCCGUUGCAACAACGCCCGCGu -3' miRNA: 3'- -GGCGCGGGCAACGUUGUUGCGGGCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home