miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11293 5' -51.7 NC_003083.1 + 32181 0.72 0.77515
Target:  5'- cGCACacugCCGGCGCuAUAUuggUCAACGCAa -3'
miRNA:   3'- -CGUGaa--GGCCGUGuUGUA---GGUUGCGU- -5'
11293 5' -51.7 NC_003083.1 + 107818 0.66 0.972291
Target:  5'- cCGCcaCUGGCGCAACcacgagcaCCGACGCGu -3'
miRNA:   3'- cGUGaaGGCCGUGUUGua------GGUUGCGU- -5'
11293 5' -51.7 NC_003083.1 + 43259 0.66 0.972291
Target:  5'- cCAUUUgCCGuGCGCAcCAUCgCGACGCc -3'
miRNA:   3'- cGUGAA-GGC-CGUGUuGUAG-GUUGCGu -5'
11293 5' -51.7 NC_003083.1 + 73731 0.66 0.966035
Target:  5'- aCGCgUuuGGCGCGACGUugcCCGcCGCAa -3'
miRNA:   3'- cGUGaAggCCGUGUUGUA---GGUuGCGU- -5'
11293 5' -51.7 NC_003083.1 + 56312 0.67 0.958844
Target:  5'- uGCGCggCCGGCGaauugauggcauUAGCggCCGACGUu -3'
miRNA:   3'- -CGUGaaGGCCGU------------GUUGuaGGUUGCGu -5'
11293 5' -51.7 NC_003083.1 + 24348 0.67 0.954883
Target:  5'- uGCACgUUgGGCAUuuguUGUCUAACGCAa -3'
miRNA:   3'- -CGUGaAGgCCGUGuu--GUAGGUUGCGU- -5'
11293 5' -51.7 NC_003083.1 + 73400 0.67 0.954474
Target:  5'- gGCAUUUCCaGCAauguucuCAacGCGUCCAACaGCGu -3'
miRNA:   3'- -CGUGAAGGcCGU-------GU--UGUAGGUUG-CGU- -5'
11293 5' -51.7 NC_003083.1 + 102724 0.67 0.946206
Target:  5'- uGCACUUCguuuuCGGCACcuucacGCAUCgCAgcuGCGCGa -3'
miRNA:   3'- -CGUGAAG-----GCCGUGu-----UGUAG-GU---UGCGU- -5'
11293 5' -51.7 NC_003083.1 + 73629 0.68 0.936498
Target:  5'- cGCGauaUCGGCGCAuguCAaCCAACGCGg -3'
miRNA:   3'- -CGUgaaGGCCGUGUu--GUaGGUUGCGU- -5'
11293 5' -51.7 NC_003083.1 + 8871 0.68 0.93125
Target:  5'- aGCcUUUCaaaGGCGCAACAUCau-CGCGg -3'
miRNA:   3'- -CGuGAAGg--CCGUGUUGUAGguuGCGU- -5'
11293 5' -51.7 NC_003083.1 + 5860 0.69 0.913927
Target:  5'- gGCGCgUCCGGUACG-CGUUCAA-GCGu -3'
miRNA:   3'- -CGUGaAGGCCGUGUuGUAGGUUgCGU- -5'
11293 5' -51.7 NC_003083.1 + 114211 0.69 0.901068
Target:  5'- gGCGCUggUUCGGCugGugaAUAUCCAGgGCu -3'
miRNA:   3'- -CGUGA--AGGCCGugU---UGUAGGUUgCGu -5'
11293 5' -51.7 NC_003083.1 + 18326 0.7 0.839757
Target:  5'- -gGCUUCCGcGUugACAACAgcgCCGGCGUAc -3'
miRNA:   3'- cgUGAAGGC-CG--UGUUGUa--GGUUGCGU- -5'
11293 5' -51.7 NC_003083.1 + 19744 0.69 0.913927
Target:  5'- aGCGCguaUUGGCucauuuugcGCAACGUCCuGCGCAu -3'
miRNA:   3'- -CGUGaa-GGCCG---------UGUUGUAGGuUGCGU- -5'
11293 5' -51.7 NC_003083.1 + 100901 0.69 0.890041
Target:  5'- cGCACUUCUGaauuguuguaaaacaGCACGcACGaaUCUAGCGCAu -3'
miRNA:   3'- -CGUGAAGGC---------------CGUGU-UGU--AGGUUGCGU- -5'
11293 5' -51.7 NC_003083.1 + 91496 0.7 0.879866
Target:  5'- gGCGCUaaUCCGGC-CAuugGCgAUCCGaaACGCGa -3'
miRNA:   3'- -CGUGA--AGGCCGuGU---UG-UAGGU--UGCGU- -5'
11293 5' -51.7 NC_003083.1 + 106226 0.7 0.856479
Target:  5'- --uUUUCCGcGCACAACAagCAAUGCGa -3'
miRNA:   3'- cguGAAGGC-CGUGUUGUagGUUGCGU- -5'
11293 5' -51.7 NC_003083.1 + 98826 0.72 0.77515
Target:  5'- -aACUcaUCCGGCACGu--UCCAugGCGu -3'
miRNA:   3'- cgUGA--AGGCCGUGUuguAGGUugCGU- -5'
11293 5' -51.7 NC_003083.1 + 44080 0.77 0.492336
Target:  5'- aCGCUUUgCGGCGCAGCGUCUAACGa- -3'
miRNA:   3'- cGUGAAG-GCCGUGUUGUAGGUUGCgu -5'
11293 5' -51.7 NC_003083.1 + 16738 0.66 0.97767
Target:  5'- aGCGa-UCCGuGCACAACG-CCcACGUAa -3'
miRNA:   3'- -CGUgaAGGC-CGUGUUGUaGGuUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.