Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11294 | 3' | -52.4 | NC_003083.1 | + | 64284 | 0.66 | 0.974382 |
|
Target: 5'- gGACU--UGGCGGagg--UGACGGCGa -3' miRNA: 3'- aCUGAuaACUGCCggauaGCUGCCGC- -5' |
|||||||
| 11294 | 3' | -52.4 | NC_003083.1 | + | 26997 | 0.66 | 0.96854 |
|
Target: 5'- -aACUAUUGugGGCCaaa-GAauUGGCGa -3' miRNA: 3'- acUGAUAACugCCGGauagCU--GCCGC- -5' |
|||||||
| 11294 | 3' | -52.4 | NC_003083.1 | + | 92402 | 0.66 | 0.967908 |
|
Target: 5'- gUGGCUGcUGGCGGCCguuucauacgCGcugccCGGCGu -3' miRNA: 3'- -ACUGAUaACUGCCGGaua-------GCu----GCCGC- -5' |
|||||||
| 11294 | 3' | -52.4 | NC_003083.1 | + | 89471 | 0.66 | 0.965289 |
|
Target: 5'- aUGACa--UGACGGCCagcgagAUUuGCGGCGc -3' miRNA: 3'- -ACUGauaACUGCCGGa-----UAGcUGCCGC- -5' |
|||||||
| 11294 | 3' | -52.4 | NC_003083.1 | + | 34477 | 0.67 | 0.949939 |
|
Target: 5'- -aACUAccacgGACaGGCCgAUUGGCGGCGu -3' miRNA: 3'- acUGAUaa---CUG-CCGGaUAGCUGCCGC- -5' |
|||||||
| 11294 | 3' | -52.4 | NC_003083.1 | + | 62754 | 0.67 | 0.94549 |
|
Target: 5'- -cGCUcgUGGCccccGGCgUGUCGucGCGGCGg -3' miRNA: 3'- acUGAuaACUG----CCGgAUAGC--UGCCGC- -5' |
|||||||
| 11294 | 3' | -52.4 | NC_003083.1 | + | 64400 | 0.68 | 0.91345 |
|
Target: 5'- aGACggc-GACGGCgUuggCGACGGUGu -3' miRNA: 3'- aCUGauaaCUGCCGgAua-GCUGCCGC- -5' |
|||||||
| 11294 | 3' | -52.4 | NC_003083.1 | + | 44048 | 0.68 | 0.906577 |
|
Target: 5'- aUGuACUGUgcugcgcUGGCGGCCUcuugUGAUGGCa -3' miRNA: 3'- -AC-UGAUA-------ACUGCCGGAua--GCUGCCGc -5' |
|||||||
| 11294 | 3' | -52.4 | NC_003083.1 | + | 100522 | 0.69 | 0.900726 |
|
Target: 5'- gUGuCUGUggUGACGGCuCUGcacaagcaacUUGACGGCa -3' miRNA: 3'- -ACuGAUA--ACUGCCG-GAU----------AGCUGCCGc -5' |
|||||||
| 11294 | 3' | -52.4 | NC_003083.1 | + | 108624 | 0.96 | 0.034644 |
|
Target: 5'- uUGACUAUUGACGGCCUAUC-ACGGCGc -3' miRNA: 3'- -ACUGAUAACUGCCGGAUAGcUGCCGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home