Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11297 | 3' | -46.3 | NC_003083.1 | + | 68721 | 0.66 | 0.999779 |
Target: 5'- aAACaguGUUUGCGCacauguuaaauaccaGCGUUGAgaacgCGACa -3' miRNA: 3'- aUUGgu-UAAACGCG---------------CGCAACUa----GUUG- -5' |
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11297 | 3' | -46.3 | NC_003083.1 | + | 18336 | 0.66 | 0.999755 |
Target: 5'- -uGCCGAUaaggaagGCGUGCccGUgGAUCAACa -3' miRNA: 3'- auUGGUUAaa-----CGCGCG--CAaCUAGUUG- -5' |
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11297 | 3' | -46.3 | NC_003083.1 | + | 27836 | 0.66 | 0.999598 |
Target: 5'- cGGCCAGcgUGCGUG-GUUGGgaagaugCAGCg -3' miRNA: 3'- aUUGGUUaaACGCGCgCAACUa------GUUG- -5' |
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11297 | 3' | -46.3 | NC_003083.1 | + | 78518 | 0.66 | 0.99949 |
Target: 5'- gUGAUCAGUUgGCGCGCaaacguAUCAACg -3' miRNA: 3'- -AUUGGUUAAaCGCGCGcaac--UAGUUG- -5' |
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11297 | 3' | -46.3 | NC_003083.1 | + | 30383 | 0.66 | 0.99949 |
Target: 5'- aUGGCCA--UUGUGCGCGgcGGUgucgugcugugcCAACg -3' miRNA: 3'- -AUUGGUuaAACGCGCGCaaCUA------------GUUG- -5' |
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11297 | 3' | -46.3 | NC_003083.1 | + | 5936 | 0.66 | 0.99949 |
Target: 5'- ---aCAAUUUGUGCGCaUUGAUaAACu -3' miRNA: 3'- auugGUUAAACGCGCGcAACUAgUUG- -5' |
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11297 | 3' | -46.3 | NC_003083.1 | + | 71283 | 0.66 | 0.999358 |
Target: 5'- -cACCAGUgUGCGCGUGcauGUCAAa -3' miRNA: 3'- auUGGUUAaACGCGCGCaacUAGUUg -5' |
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11297 | 3' | -46.3 | NC_003083.1 | + | 102141 | 0.66 | 0.999358 |
Target: 5'- -cGCCG---UGCGCGCGUUGu---ACg -3' miRNA: 3'- auUGGUuaaACGCGCGCAACuaguUG- -5' |
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11297 | 3' | -46.3 | NC_003083.1 | + | 68097 | 0.67 | 0.998495 |
Target: 5'- uUGACaaaAAaUUGCGCaUGUUGAUUAACa -3' miRNA: 3'- -AUUGg--UUaAACGCGcGCAACUAGUUG- -5' |
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11297 | 3' | -46.3 | NC_003083.1 | + | 71840 | 0.67 | 0.998495 |
Target: 5'- uUGGCCAca-UGUGCGUGUU--UCAACa -3' miRNA: 3'- -AUUGGUuaaACGCGCGCAAcuAGUUG- -5' |
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11297 | 3' | -46.3 | NC_003083.1 | + | 31796 | 0.67 | 0.998495 |
Target: 5'- aUAACCAuaa-GCGCGCacgucgacgUGAUCAAUa -3' miRNA: 3'- -AUUGGUuaaaCGCGCGca-------ACUAGUUG- -5' |
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11297 | 3' | -46.3 | NC_003083.1 | + | 9261 | 0.68 | 0.998167 |
Target: 5'- cGGCCAGUUUGUgcgucaGCGCGUUGca-AAUa -3' miRNA: 3'- aUUGGUUAAACG------CGCGCAACuagUUG- -5' |
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11297 | 3' | -46.3 | NC_003083.1 | + | 30662 | 0.68 | 0.998167 |
Target: 5'- aAGCCGAcaaUGUGCGgGUUGuagCGGCg -3' miRNA: 3'- aUUGGUUaa-ACGCGCgCAACua-GUUG- -5' |
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11297 | 3' | -46.3 | NC_003083.1 | + | 95177 | 0.68 | 0.997329 |
Target: 5'- gAAUCAGUUUGUGUGUGUUGuugCugguGCa -3' miRNA: 3'- aUUGGUUAAACGCGCGCAACua-Gu---UG- -5' |
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11297 | 3' | -46.3 | NC_003083.1 | + | 72798 | 0.71 | 0.984159 |
Target: 5'- aAACCAuuucgucgccgGCGCGCGUuUGAcuuUCAACa -3' miRNA: 3'- aUUGGUuaaa-------CGCGCGCA-ACU---AGUUG- -5' |
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11297 | 3' | -46.3 | NC_003083.1 | + | 73647 | 0.71 | 0.983334 |
Target: 5'- cAACCAAc--GCGgGCGUUGuugCAACg -3' miRNA: 3'- aUUGGUUaaaCGCgCGCAACua-GUUG- -5' |
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11297 | 3' | -46.3 | NC_003083.1 | + | 58665 | 0.73 | 0.935645 |
Target: 5'- aUAACCAAUUaaaaUGCGUGCc--GAUCAACc -3' miRNA: 3'- -AUUGGUUAA----ACGCGCGcaaCUAGUUG- -5' |
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11297 | 3' | -46.3 | NC_003083.1 | + | 45866 | 0.74 | 0.930061 |
Target: 5'- ----gGGUUUGCGCGCGUguuuGUCAACg -3' miRNA: 3'- auuggUUAAACGCGCGCAac--UAGUUG- -5' |
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11297 | 3' | -46.3 | NC_003083.1 | + | 22912 | 0.74 | 0.918013 |
Target: 5'- uUGACCAAUaccCG-GCGUUGGUCAACa -3' miRNA: 3'- -AUUGGUUAaacGCgCGCAACUAGUUG- -5' |
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11297 | 3' | -46.3 | NC_003083.1 | + | 6048 | 0.75 | 0.897758 |
Target: 5'- aAACCAAguaUGCGCGCGUuuUGAaCAAUu -3' miRNA: 3'- aUUGGUUaa-ACGCGCGCA--ACUaGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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