Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11298 | 3' | -45.4 | NC_003083.1 | + | 25289 | 0.66 | 0.999915 |
Target: 5'- aCGUUAUcuacaugagcGCCACGUCGccGUUaUACAUUa -3' miRNA: 3'- -GCAGUA----------CGGUGUAGCa-CAAaAUGUAA- -5' |
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11298 | 3' | -45.4 | NC_003083.1 | + | 26113 | 0.67 | 0.999585 |
Target: 5'- aCGUCG-GCCA-AUCGUGUacgUGCAUUu -3' miRNA: 3'- -GCAGUaCGGUgUAGCACAaa-AUGUAA- -5' |
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11298 | 3' | -45.4 | NC_003083.1 | + | 28361 | 0.68 | 0.999338 |
Target: 5'- aCG-CG-GCCACGUUGUGUUUaGCAg- -3' miRNA: 3'- -GCaGUaCGGUGUAGCACAAAaUGUaa -5' |
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11298 | 3' | -45.4 | NC_003083.1 | + | 25345 | 0.69 | 0.998117 |
Target: 5'- aGUUggGCCACAUgaaCGUGUcgUUGCAUc -3' miRNA: 3'- gCAGuaCGGUGUA---GCACAa-AAUGUAa -5' |
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11298 | 3' | -45.4 | NC_003083.1 | + | 19164 | 0.72 | 0.986895 |
Target: 5'- -aUCAUcCCACA-CGUGUUUUACAUUu -3' miRNA: 3'- gcAGUAcGGUGUaGCACAAAAUGUAA- -5' |
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11298 | 3' | -45.4 | NC_003083.1 | + | 18986 | 1.07 | 0.030769 |
Target: 5'- aCGUCAUGCCACAUCGUGUUUUACAUUu -3' miRNA: 3'- -GCAGUACGGUGUAGCACAAAAUGUAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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