Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11299 | 3' | -50.5 | NC_003083.1 | + | 56249 | 0.67 | 0.983063 |
Target: 5'- gACGGCAaacUGUAcacGGGCAucacaaGCGAUUUGCGa -3' miRNA: 3'- gUGCUGU---GCAU---CCCGU------UGCUGAAUGU- -5' |
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11299 | 3' | -50.5 | NC_003083.1 | + | 9122 | 0.67 | 0.980946 |
Target: 5'- -cCGACAcCGUAGuGGUggUGACU-ACAg -3' miRNA: 3'- guGCUGU-GCAUC-CCGuuGCUGAaUGU- -5' |
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11299 | 3' | -50.5 | NC_003083.1 | + | 60457 | 0.67 | 0.978636 |
Target: 5'- aCGCGuACGCGUAcacGGGCAACGGu----- -3' miRNA: 3'- -GUGC-UGUGCAU---CCCGUUGCUgaaugu -5' |
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11299 | 3' | -50.5 | NC_003083.1 | + | 94841 | 0.68 | 0.963912 |
Target: 5'- -uUGAC-CGuUGGGGCAGCGACa-GCAa -3' miRNA: 3'- guGCUGuGC-AUCCCGUUGCUGaaUGU- -5' |
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11299 | 3' | -50.5 | NC_003083.1 | + | 62613 | 0.69 | 0.93834 |
Target: 5'- gACGACACGccgGGGGCcACGAgcgccauuaUUGCAa -3' miRNA: 3'- gUGCUGUGCa--UCCCGuUGCUg--------AAUGU- -5' |
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11299 | 3' | -50.5 | NC_003083.1 | + | 23988 | 0.69 | 0.933173 |
Target: 5'- gCACGGCGUGUuGGGCGGCGAgUaugACAc -3' miRNA: 3'- -GUGCUGUGCAuCCCGUUGCUgAa--UGU- -5' |
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11299 | 3' | -50.5 | NC_003083.1 | + | 88238 | 0.7 | 0.909854 |
Target: 5'- gCGCGGugcCGCG-AGGGUAACGACcgGCGc -3' miRNA: 3'- -GUGCU---GUGCaUCCCGUUGCUGaaUGU- -5' |
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11299 | 3' | -50.5 | NC_003083.1 | + | 19870 | 1.09 | 0.007235 |
Target: 5'- cCACGACACGUAGGGCAACGACUUACAg -3' miRNA: 3'- -GUGCUGUGCAUCCCGUUGCUGAAUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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