miRNA display CGI


Results 1 - 5 of 5 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1130 5' -55.6 NC_000942.1 + 14077 0.66 0.5514
Target:  5'- cGGUCUUauugGCgaGCcgCGUGGGGCAGu -3'
miRNA:   3'- cCCGGAAgua-CG--UGuaGCGCCCUGUC- -5'
1130 5' -55.6 NC_000942.1 + 19488 0.69 0.349438
Target:  5'- gGGGCC-UCAUaGCGCAgCGUGuGGACu- -3'
miRNA:   3'- -CCCGGaAGUA-CGUGUaGCGC-CCUGuc -5'
1130 5' -55.6 NC_000942.1 + 15871 0.7 0.299964
Target:  5'- gGGGCUUUCAacagGCAU-UCaCGGGGCAGu -3'
miRNA:   3'- -CCCGGAAGUa---CGUGuAGcGCCCUGUC- -5'
1130 5' -55.6 NC_000942.1 + 1912 0.74 0.174083
Target:  5'- gGGGCgCUguuauaaagguUCAUGCAag-CGUGGGACAGc -3'
miRNA:   3'- -CCCG-GA-----------AGUACGUguaGCGCCCUGUC- -5'
1130 5' -55.6 NC_000942.1 + 16443 1.11 0.000284
Target:  5'- uGGGCCUUCAUGCACAUCGCGGGACAGg -3'
miRNA:   3'- -CCCGGAAGUACGUGUAGCGCCCUGUC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.