miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11300 3' -50.9 NC_003083.1 + 30535 0.66 0.978815
Target:  5'- uGGCAcaGCACGACaccgcCGCGCACa---- -3'
miRNA:   3'- uUCGU--UGUGCUGau---GCGCGUGcaaua -5'
11300 3' -50.9 NC_003083.1 + 18699 0.66 0.970518
Target:  5'- -cGCGGaucuCGCGACgucaaugucgACGCGUACGUUGa -3'
miRNA:   3'- uuCGUU----GUGCUGa---------UGCGCGUGCAAUa -5'
11300 3' -50.9 NC_003083.1 + 112276 0.66 0.970518
Target:  5'- uAGCAACACaGCUACGCcaGC-CGUUu- -3'
miRNA:   3'- uUCGUUGUGcUGAUGCG--CGuGCAAua -5'
11300 3' -50.9 NC_003083.1 + 13062 0.66 0.967295
Target:  5'- cAGCAACAUGACUcaACuaGCugGUc-- -3'
miRNA:   3'- uUCGUUGUGCUGA--UGcgCGugCAaua -5'
11300 3' -50.9 NC_003083.1 + 81630 0.67 0.963831
Target:  5'- uGGCGGCgAUGAaggACGUGCACGUg-- -3'
miRNA:   3'- uUCGUUG-UGCUga-UGCGCGUGCAaua -5'
11300 3' -50.9 NC_003083.1 + 56648 0.67 0.961258
Target:  5'- cGGCGGCaguuauuaccauuACGugUugaacgaaaaaaaucGCGCGCGCGUUGUc -3'
miRNA:   3'- uUCGUUG-------------UGCugA---------------UGCGCGUGCAAUA- -5'
11300 3' -50.9 NC_003083.1 + 104939 0.67 0.960118
Target:  5'- cAGGCGauACAUGACcggcgGCGCGUAUGUUu- -3'
miRNA:   3'- -UUCGU--UGUGCUGa----UGCGCGUGCAAua -5'
11300 3' -50.9 NC_003083.1 + 28102 0.67 0.960118
Target:  5'- -cGUGACGCGGCccgaauugaGCGCGCACGa--- -3'
miRNA:   3'- uuCGUUGUGCUGa--------UGCGCGUGCaaua -5'
11300 3' -50.9 NC_003083.1 + 28341 0.67 0.95615
Target:  5'- gGGGCAauGCACGcGCgcggACGCGgcCACGUUGUg -3'
miRNA:   3'- -UUCGU--UGUGC-UGa---UGCGC--GUGCAAUA- -5'
11300 3' -50.9 NC_003083.1 + 43350 0.67 0.951922
Target:  5'- -uGCGAauuguaaugucCACGACUACGUGUACGc--- -3'
miRNA:   3'- uuCGUU-----------GUGCUGAUGCGCGUGCaaua -5'
11300 3' -50.9 NC_003083.1 + 43925 0.67 0.951922
Target:  5'- aGAGCAGCGCGgucguuagacGCUGCGcCGCaaaGCGUg-- -3'
miRNA:   3'- -UUCGUUGUGC----------UGAUGC-GCG---UGCAaua -5'
11300 3' -50.9 NC_003083.1 + 88191 0.67 0.951485
Target:  5'- cGGGCGACAUGACUA-GCGguacccaaauagaCGCGUUGa -3'
miRNA:   3'- -UUCGUUGUGCUGAUgCGC-------------GUGCAAUa -5'
11300 3' -50.9 NC_003083.1 + 113625 0.67 0.951044
Target:  5'- uGAGCAAuugguuaucgcucuuCACcauauuaaucucguGCUGCGCGCGCGUUGUg -3'
miRNA:   3'- -UUCGUU---------------GUGc-------------UGAUGCGCGUGCAAUA- -5'
11300 3' -50.9 NC_003083.1 + 71306 0.68 0.937633
Target:  5'- cAGCAACgauuuugcguACGAuuaCUACGUGCGCGUg-- -3'
miRNA:   3'- uUCGUUG----------UGCU---GAUGCGCGUGCAaua -5'
11300 3' -50.9 NC_003083.1 + 25494 0.68 0.920881
Target:  5'- aAAGUaAACACGcCUuggGCGCGCACGUc-- -3'
miRNA:   3'- -UUCG-UUGUGCuGA---UGCGCGUGCAaua -5'
11300 3' -50.9 NC_003083.1 + 87775 0.7 0.880021
Target:  5'- uGGCAACGaGAUcAUGUGCACGUUAa -3'
miRNA:   3'- uUCGUUGUgCUGaUGCGCGUGCAAUa -5'
11300 3' -50.9 NC_003083.1 + 109692 0.7 0.864317
Target:  5'- -cGCAACGCcaauGGCUACGUGCAUGcUAa -3'
miRNA:   3'- uuCGUUGUG----CUGAUGCGCGUGCaAUa -5'
11300 3' -50.9 NC_003083.1 + 8430 0.7 0.864317
Target:  5'- -uGCAACACG---GCGCGUugGUUAa -3'
miRNA:   3'- uuCGUUGUGCugaUGCGCGugCAAUa -5'
11300 3' -50.9 NC_003083.1 + 47288 0.71 0.820976
Target:  5'- gAAGCGuuuaGCGACUAcgcucCGCGCACGUa-- -3'
miRNA:   3'- -UUCGUug--UGCUGAU-----GCGCGUGCAaua -5'
11300 3' -50.9 NC_003083.1 + 42048 0.72 0.791549
Target:  5'- cAGCGGCAUGAUUGucaccacUGCGCACGUUu- -3'
miRNA:   3'- uUCGUUGUGCUGAU-------GCGCGUGCAAua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.