miRNA display CGI

Results 1 - 5 of 5 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
11301	3'	-51.7	NC_003083.1	+	84598	0.66	0.975492
	Target:  5'- -----aGACGCACG-CGUCGGCGg-- -3' miRNA:   3'- cucauaCUGUGUGCgGCAGCUGCaua -5'
11301	3'	-51.7	NC_003083.1	+	74424	0.67	0.964516
	Target:  5'- ---gAUGACGCugacacaccgccgcgGCGUCGUCGGCGUu- -3' miRNA:   3'- cucaUACUGUG---------------UGCGGCAGCUGCAua -5'
11301	3'	-51.7	NC_003083.1	+	23119	0.68	0.926643
	Target:  5'- uAGUAUGccgGCgGCGCGCUGUUGGCGUu- -3' miRNA:   3'- cUCAUAC---UG-UGUGCGGCAGCUGCAua -5'
11301	3'	-51.7	NC_003083.1	+	4496	0.76	0.535259
	Target:  5'- --aUGUGACACGCGUCGUUGACGc-- -3' miRNA:   3'- cucAUACUGUGUGCGGCAGCUGCaua -5'
11301	3'	-51.7	NC_003083.1	+	24006	1.06	0.00901
	Target:  5'- cGAGUAUGACACACGCCGUCGACGUAUc -3' miRNA:   3'- -CUCAUACUGUGUGCGGCAGCUGCAUA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home