Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11302 | 3' | -46.8 | NC_003083.1 | + | 2073 | 0.67 | 0.999241 |
Target: 5'- -cUUGCGACGCcCCcAUUUucGGCACa -3' miRNA: 3'- cuAGCGCUGUGuGGuUAAAu-UCGUGc -5' |
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11302 | 3' | -46.8 | NC_003083.1 | + | 8535 | 0.73 | 0.954044 |
Target: 5'- uGGUCGCccaucauggguaGACACACCA---UGGGCACu -3' miRNA: 3'- -CUAGCG------------CUGUGUGGUuaaAUUCGUGc -5' |
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11302 | 3' | -46.8 | NC_003083.1 | + | 9471 | 0.67 | 0.999241 |
Target: 5'- cGGUCGCG-CGCGCaaucGUUUcGGCGCu -3' miRNA: 3'- -CUAGCGCuGUGUGgu--UAAAuUCGUGc -5' |
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11302 | 3' | -46.8 | NC_003083.1 | + | 12755 | 0.7 | 0.988057 |
Target: 5'- --aUuaGAUuugACACCAAUUUAGGCACGu -3' miRNA: 3'- cuaGcgCUG---UGUGGUUAAAUUCGUGC- -5' |
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11302 | 3' | -46.8 | NC_003083.1 | + | 27923 | 0.97 | 0.098881 |
Target: 5'- cGAUCGCGACACACCAAUUUAA-CACGg -3' miRNA: 3'- -CUAGCGCUGUGUGGUUAAAUUcGUGC- -5' |
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11302 | 3' | -46.8 | NC_003083.1 | + | 28103 | 0.74 | 0.929195 |
Target: 5'- --aCGUGACGCGgcCCGAaUUGAGCGCGc -3' miRNA: 3'- cuaGCGCUGUGU--GGUUaAAUUCGUGC- -5' |
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11302 | 3' | -46.8 | NC_003083.1 | + | 30640 | 0.71 | 0.982466 |
Target: 5'- ---aGCGGCGCACgG---UGAGCACGa -3' miRNA: 3'- cuagCGCUGUGUGgUuaaAUUCGUGC- -5' |
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11302 | 3' | -46.8 | NC_003083.1 | + | 35174 | 0.69 | 0.994112 |
Target: 5'- uGAUgCGCGuCACcucguuGCCAAUgcgguacUUGAGCACGg -3' miRNA: 3'- -CUA-GCGCuGUG------UGGUUA-------AAUUCGUGC- -5' |
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11302 | 3' | -46.8 | NC_003083.1 | + | 43276 | 0.67 | 0.998498 |
Target: 5'- cAUCGCGACGCcauugcuuuuugugGCCAugAUUgugcGCACGg -3' miRNA: 3'- cUAGCGCUGUG--------------UGGU--UAAauu-CGUGC- -5' |
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11302 | 3' | -46.8 | NC_003083.1 | + | 46304 | 0.66 | 0.999699 |
Target: 5'- --gCGCGG-ACGCCAAc--AAGCGCGa -3' miRNA: 3'- cuaGCGCUgUGUGGUUaaaUUCGUGC- -5' |
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11302 | 3' | -46.8 | NC_003083.1 | + | 47440 | 0.66 | 0.999391 |
Target: 5'- aGGUCGCGAuucCACACaCAAUaUUAacuacaAGUACGa -3' miRNA: 3'- -CUAGCGCU---GUGUG-GUUA-AAU------UCGUGC- -5' |
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11302 | 3' | -46.8 | NC_003083.1 | + | 51843 | 0.67 | 0.998843 |
Target: 5'- cGUCGCGACcaGCCAAUUccGAGCGu- -3' miRNA: 3'- cUAGCGCUGugUGGUUAAa-UUCGUgc -5' |
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11302 | 3' | -46.8 | NC_003083.1 | + | 58143 | 0.69 | 0.992157 |
Target: 5'- cGUCGUG-CGCACCucucaUUAAGCGCu -3' miRNA: 3'- cUAGCGCuGUGUGGuua--AAUUCGUGc -5' |
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11302 | 3' | -46.8 | NC_003083.1 | + | 58828 | 0.66 | 0.999765 |
Target: 5'- cGcgCGCGuauCGCACgGGUUgaucGGCACGc -3' miRNA: 3'- -CuaGCGCu--GUGUGgUUAAau--UCGUGC- -5' |
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11302 | 3' | -46.8 | NC_003083.1 | + | 62611 | 0.67 | 0.99906 |
Target: 5'- --gCGaCGACACGCCGGgggccacGAGCGCc -3' miRNA: 3'- cuaGC-GCUGUGUGGUUaaa----UUCGUGc -5' |
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11302 | 3' | -46.8 | NC_003083.1 | + | 63915 | 0.69 | 0.992157 |
Target: 5'- uGUUGcCGACACACCG--UUGAuGCACa -3' miRNA: 3'- cUAGC-GCUGUGUGGUuaAAUU-CGUGc -5' |
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11302 | 3' | -46.8 | NC_003083.1 | + | 65026 | 0.69 | 0.992041 |
Target: 5'- uGGUCGCGACACAU-------GGCGCa -3' miRNA: 3'- -CUAGCGCUGUGUGguuaaauUCGUGc -5' |
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11302 | 3' | -46.8 | NC_003083.1 | + | 66694 | 0.66 | 0.999616 |
Target: 5'- -uUCGCGGUACACUAGcgu--GCACGa -3' miRNA: 3'- cuAGCGCUGUGUGGUUaaauuCGUGC- -5' |
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11302 | 3' | -46.8 | NC_003083.1 | + | 68133 | 0.66 | 0.999759 |
Target: 5'- uGAUCGCGACACuuuuaugAUCAAUUU--GCAa- -3' miRNA: 3'- -CUAGCGCUGUG-------UGGUUAAAuuCGUgc -5' |
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11302 | 3' | -46.8 | NC_003083.1 | + | 71941 | 0.66 | 0.999765 |
Target: 5'- cAUCGCGGCcaacccGCGCUAuuGUUUGcaaguguuuAGCGCGg -3' miRNA: 3'- cUAGCGCUG------UGUGGU--UAAAU---------UCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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