miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11302 5' -57.7 NC_003083.1 + 23387 0.66 0.788574
Target:  5'- cGCGCGCcacacuuuuucgUCAuugCGcGCCGCGUCu- -3'
miRNA:   3'- aCGCGCG------------AGUuaaGCcCGGCGCAGug -5'
11302 5' -57.7 NC_003083.1 + 28477 0.66 0.788574
Target:  5'- cGCGCGCgugCAuugccccCGGGCCGC--CAUa -3'
miRNA:   3'- aCGCGCGa--GUuaa----GCCCGGCGcaGUG- -5'
11302 5' -57.7 NC_003083.1 + 11927 0.66 0.779268
Target:  5'- aGgGCGCUCAucaacaaCGGGUacgGCGUCGu -3'
miRNA:   3'- aCgCGCGAGUuaa----GCCCGg--CGCAGUg -5'
11302 5' -57.7 NC_003083.1 + 56462 0.66 0.769828
Target:  5'- gGC-CGCuaaugccaUCAAUUCGccGGCCGCG-CACu -3'
miRNA:   3'- aCGcGCG--------AGUUAAGC--CCGGCGCaGUG- -5'
11302 5' -57.7 NC_003083.1 + 55628 0.67 0.730908
Target:  5'- aGCGCGCauUCAA-UCGGcGuuGCGUUuugaGCg -3'
miRNA:   3'- aCGCGCG--AGUUaAGCC-CggCGCAG----UG- -5'
11302 5' -57.7 NC_003083.1 + 74091 0.67 0.730908
Target:  5'- uUGCaGCGaCUCAAccagcuugCGGGCCGCGa--- -3'
miRNA:   3'- -ACG-CGC-GAGUUaa------GCCCGGCGCagug -5'
11302 5' -57.7 NC_003083.1 + 56963 0.67 0.710886
Target:  5'- -uUGUGCUCAAUUCGuuGCCaGCGUaCGCg -3'
miRNA:   3'- acGCGCGAGUUAAGCc-CGG-CGCA-GUG- -5'
11302 5' -57.7 NC_003083.1 + 24886 0.68 0.638107
Target:  5'- cGCGCGUaaaagCAcGUUCGaagauuauuggccGGCCGCGUUGCa -3'
miRNA:   3'- aCGCGCGa----GU-UAAGC-------------CCGGCGCAGUG- -5'
11302 5' -57.7 NC_003083.1 + 39561 0.7 0.556914
Target:  5'- aGUGCGCcauUCGAccaaguUUUGGGuuGCGUUACc -3'
miRNA:   3'- aCGCGCG---AGUU------AAGCCCggCGCAGUG- -5'
11302 5' -57.7 NC_003083.1 + 27957 1.1 0.001197
Target:  5'- gUGCGCGCUCAAUUCGGGCCGCGUCACg -3'
miRNA:   3'- -ACGCGCGAGUUAAGCCCGGCGCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.