miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11303 3' -49.1 NC_003083.1 + 107967 0.66 0.996588
Target:  5'- cGCGUCggUGC--UCGUggUUGcGCCAGUg -3'
miRNA:   3'- -UGCAGuuGUGuuAGCAa-AGC-CGGUCG- -5'
11303 3' -49.1 NC_003083.1 + 97668 0.66 0.995271
Target:  5'- uGCGg--GCACGGUCGUU---GCCGGCu -3'
miRNA:   3'- -UGCaguUGUGUUAGCAAagcCGGUCG- -5'
11303 3' -49.1 NC_003083.1 + 69311 0.66 0.995271
Target:  5'- uCGUCAGCAaGAUUGUUcgaGGCCAa- -3'
miRNA:   3'- uGCAGUUGUgUUAGCAAag-CCGGUcg -5'
11303 3' -49.1 NC_003083.1 + 3236 0.66 0.995271
Target:  5'- cACGUUGGCAauuGUCGUUUUGGCg--- -3'
miRNA:   3'- -UGCAGUUGUgu-UAGCAAAGCCGgucg -5'
11303 3' -49.1 NC_003083.1 + 87226 0.67 0.99013
Target:  5'- -aG-CAGCGCAAagccggucuUUGUUUCGGCCAa- -3'
miRNA:   3'- ugCaGUUGUGUU---------AGCAAAGCCGGUcg -5'
11303 3' -49.1 NC_003083.1 + 49988 0.68 0.987132
Target:  5'- uUGUCAGCAuCAAUCGgaUCaGCCAc- -3'
miRNA:   3'- uGCAGUUGU-GUUAGCaaAGcCGGUcg -5'
11303 3' -49.1 NC_003083.1 + 24884 0.68 0.985392
Target:  5'- cGCGUaaaAGCACGuUCGaagauuaUUGGCCGGCc -3'
miRNA:   3'- -UGCAg--UUGUGUuAGCaa-----AGCCGGUCG- -5'
11303 3' -49.1 NC_003083.1 + 43083 0.68 0.983478
Target:  5'- cGCGUCGACACcguguuaauGUCGg--UGGCUuGCg -3'
miRNA:   3'- -UGCAGUUGUGu--------UAGCaaaGCCGGuCG- -5'
11303 3' -49.1 NC_003083.1 + 4928 0.69 0.976594
Target:  5'- cACuUCAGCACAAUUGUauuuaUCG-CCGGCa -3'
miRNA:   3'- -UGcAGUUGUGUUAGCAa----AGCcGGUCG- -5'
11303 3' -49.1 NC_003083.1 + 62802 0.69 0.973888
Target:  5'- gACGUgcGCACGcgCGUggCGGCUgacAGCg -3'
miRNA:   3'- -UGCAguUGUGUuaGCAaaGCCGG---UCG- -5'
11303 3' -49.1 NC_003083.1 + 24899 0.7 0.947007
Target:  5'- aGCGUCGcgugcacaaacucgACACAAUCaucUUCGuGCCAGUu -3'
miRNA:   3'- -UGCAGU--------------UGUGUUAGca-AAGC-CGGUCG- -5'
11303 3' -49.1 NC_003083.1 + 8105 0.72 0.896818
Target:  5'- cCGUCAACGgAAUUGUguacgugagcUUCGGauCCAGCa -3'
miRNA:   3'- uGCAGUUGUgUUAGCA----------AAGCC--GGUCG- -5'
11303 3' -49.1 NC_003083.1 + 85017 0.73 0.874876
Target:  5'- aAUGUCGAgACAAUUGUgugaUCG-CCAGCg -3'
miRNA:   3'- -UGCAGUUgUGUUAGCAa---AGCcGGUCG- -5'
11303 3' -49.1 NC_003083.1 + 87178 0.73 0.867064
Target:  5'- cGCGgguuGCACGAUCGUgcucguucgCGGuCCAGCg -3'
miRNA:   3'- -UGCagu-UGUGUUAGCAaa-------GCC-GGUCG- -5'
11303 3' -49.1 NC_003083.1 + 71669 0.75 0.796644
Target:  5'- uCGUCAAgACAcgCGUacaUGGCCGGCu -3'
miRNA:   3'- uGCAGUUgUGUuaGCAaa-GCCGGUCG- -5'
11303 3' -49.1 NC_003083.1 + 9470 0.75 0.777166
Target:  5'- -gGUCGcgcGCGCAAUCGUUUCGGC--GCu -3'
miRNA:   3'- ugCAGU---UGUGUUAGCAAAGCCGguCG- -5'
11303 3' -49.1 NC_003083.1 + 628 0.76 0.746878
Target:  5'- uGCGUCAGCAUAg------CGGCCAGCa -3'
miRNA:   3'- -UGCAGUUGUGUuagcaaaGCCGGUCG- -5'
11303 3' -49.1 NC_003083.1 + 24058 0.79 0.596732
Target:  5'- uGCGUUG--GCAAUCGgcUUGGCCAGCa -3'
miRNA:   3'- -UGCAGUugUGUUAGCaaAGCCGGUCG- -5'
11303 3' -49.1 NC_003083.1 + 32315 0.86 0.249208
Target:  5'- aGCGcCGGCAguGUgCGUUUCGGCCAGCg -3'
miRNA:   3'- -UGCaGUUGUguUA-GCAAAGCCGGUCG- -5'
11303 3' -49.1 NC_003083.1 + 32128 1.12 0.0073
Target:  5'- cACGUCAACACAAUCGUUUCGGCCAGCc -3'
miRNA:   3'- -UGCAGUUGUGUUAGCAAAGCCGGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.