miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11303 5' -57 NC_003083.1 + 44766 0.66 0.848063
Target:  5'- uUGgUGGCCGGcuCGUcgGCauuugcuuuGCUGCCGGu -3'
miRNA:   3'- cGCgACCGGCUuuGCG--UG---------UGACGGCC- -5'
11303 5' -57 NC_003083.1 + 56312 0.66 0.83916
Target:  5'- uGCGC-GGCCGGcgaauugAugGCAUuaGCgGCCGa -3'
miRNA:   3'- -CGCGaCCGGCU-------UugCGUG--UGaCGGCc -5'
11303 5' -57 NC_003083.1 + 71680 0.66 0.836692
Target:  5'- cGCGUacaUGGCCGGcuuguguugaaacACGCACAUgugGCCa- -3'
miRNA:   3'- -CGCG---ACCGGCUu------------UGCGUGUGa--CGGcc -5'
11303 5' -57 NC_003083.1 + 66210 0.66 0.831706
Target:  5'- aGUGUaugUGGCCGAcaaGC-CACUGUCGa -3'
miRNA:   3'- -CGCG---ACCGGCUuugCGuGUGACGGCc -5'
11303 5' -57 NC_003083.1 + 25592 0.66 0.831706
Target:  5'- -aGCaUGGCUucuAAACGCACGCaUGCCa- -3'
miRNA:   3'- cgCG-ACCGGc--UUUGCGUGUG-ACGGcc -5'
11303 5' -57 NC_003083.1 + 52355 0.66 0.82325
Target:  5'- cGCGUuggUGGCCGAAAUGCAaACauCCGa -3'
miRNA:   3'- -CGCG---ACCGGCUUUGCGUgUGacGGCc -5'
11303 5' -57 NC_003083.1 + 71805 0.66 0.822395
Target:  5'- aGCGCggguUGGCCGcGAUGuCGCugcagaccugcguACUGCCGu -3'
miRNA:   3'- -CGCG----ACCGGCuUUGC-GUG-------------UGACGGCc -5'
11303 5' -57 NC_003083.1 + 113670 0.67 0.787762
Target:  5'- cGCGCguuGUgGAAGCGCGCAauuUUGCCa- -3'
miRNA:   3'- -CGCGac-CGgCUUUGCGUGU---GACGGcc -5'
11303 5' -57 NC_003083.1 + 102024 0.67 0.787762
Target:  5'- uUGUUGGgCGAAACGUACAaagcgGCCa- -3'
miRNA:   3'- cGCGACCgGCUUUGCGUGUga---CGGcc -5'
11303 5' -57 NC_003083.1 + 28098 0.67 0.769138
Target:  5'- aCGC-GGcCCGAAuugaGCGCGCACgacgcgGCCGu -3'
miRNA:   3'- cGCGaCC-GGCUU----UGCGUGUGa-----CGGCc -5'
11303 5' -57 NC_003083.1 + 85817 0.67 0.769138
Target:  5'- aCGUUGGCCGuuAGCGaCAUgauaACUGCUGa -3'
miRNA:   3'- cGCGACCGGCu-UUGC-GUG----UGACGGCc -5'
11303 5' -57 NC_003083.1 + 84741 0.67 0.769138
Target:  5'- cCGCcGGCCGcguAGAUGCGCAgUaagcccaacGCCGGa -3'
miRNA:   3'- cGCGaCCGGC---UUUGCGUGUgA---------CGGCC- -5'
11303 5' -57 NC_003083.1 + 102846 0.68 0.730493
Target:  5'- aGUGCaaucGGCCGAAuucACGUACACgcccGCCa- -3'
miRNA:   3'- -CGCGa---CCGGCUU---UGCGUGUGa---CGGcc -5'
11303 5' -57 NC_003083.1 + 89873 0.68 0.71062
Target:  5'- cGUG-UGGgCGGuuCGCAaagaaGCUGCCGGa -3'
miRNA:   3'- -CGCgACCgGCUuuGCGUg----UGACGGCC- -5'
11303 5' -57 NC_003083.1 + 32690 0.68 0.71062
Target:  5'- aGCaCUGGCCGAAGCuGUAUACaUGCUu- -3'
miRNA:   3'- -CGcGACCGGCUUUG-CGUGUG-ACGGcc -5'
11303 5' -57 NC_003083.1 + 91496 0.69 0.670142
Target:  5'- gGCGCUaauccGGCCauuggcgauccGAAACGCgACGCUGCUa- -3'
miRNA:   3'- -CGCGA-----CCGG-----------CUUUGCG-UGUGACGGcc -5'
11303 5' -57 NC_003083.1 + 58843 0.69 0.649681
Target:  5'- gGCGUagaGGCCG-GGCGCGCGCguaucGCaCGGg -3'
miRNA:   3'- -CGCGa--CCGGCuUUGCGUGUGa----CG-GCC- -5'
11303 5' -57 NC_003083.1 + 87074 0.7 0.629164
Target:  5'- uUGUUGGCCGAAACaaagaccgGCuuuGCGCUGCUGu -3'
miRNA:   3'- cGCGACCGGCUUUG--------CG---UGUGACGGCc -5'
11303 5' -57 NC_003083.1 + 47214 0.7 0.585161
Target:  5'- aGCGCUGGCCcaaauaugGAGccaccgacgucaacACGCGCACUGUUc- -3'
miRNA:   3'- -CGCGACCGG--------CUU--------------UGCGUGUGACGGcc -5'
11303 5' -57 NC_003083.1 + 27710 0.71 0.547778
Target:  5'- aCGCUGGCCGgcGC-CGCAaUGuCCGGu -3'
miRNA:   3'- cGCGACCGGCuuUGcGUGUgAC-GGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.