Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11304 | 5' | -52.1 | NC_003083.1 | + | 88239 | 0.66 | 0.971809 |
|
Target: 5'- gGCGCGGUGCCGCgaGgguAACGa---- -3' miRNA: 3'- -CGCGUCACGGUGggCau-UUGCaguuc -5' |
|||||||
| 11304 | 5' | -52.1 | NC_003083.1 | + | 78103 | 0.66 | 0.968785 |
|
Target: 5'- aGCGCuuGGUGCCACUuUGUAAAUGgCAc- -3' miRNA: 3'- -CGCG--UCACGGUGG-GCAUUUGCaGUuc -5' |
|||||||
| 11304 | 5' | -52.1 | NC_003083.1 | + | 100716 | 0.67 | 0.958343 |
|
Target: 5'- gGCGCAGguggcGCCGCCCGcUGAuGCG-CuAGa -3' miRNA: 3'- -CGCGUCa----CGGUGGGC-AUU-UGCaGuUC- -5' |
|||||||
| 11304 | 5' | -52.1 | NC_003083.1 | + | 43635 | 0.67 | 0.958343 |
|
Target: 5'- uGCGC-GUGCCGCcaaagCCGUGcGCGaUCAGu -3' miRNA: 3'- -CGCGuCACGGUG-----GGCAUuUGC-AGUUc -5' |
|||||||
| 11304 | 5' | -52.1 | NC_003083.1 | + | 106413 | 0.69 | 0.907351 |
|
Target: 5'- aGCGUgAGUGCUugCCGUuuuccauAAUGUCAc- -3' miRNA: 3'- -CGCG-UCACGGugGGCAu------UUGCAGUuc -5' |
|||||||
| 11304 | 5' | -52.1 | NC_003083.1 | + | 6464 | 0.72 | 0.756416 |
|
Target: 5'- aGCGUguuuaaaUGCCACCCGUuuACGuUCAAGu -3' miRNA: 3'- -CGCGuc-----ACGGUGGGCAuuUGC-AGUUC- -5' |
|||||||
| 11304 | 5' | -52.1 | NC_003083.1 | + | 21574 | 0.74 | 0.652537 |
|
Target: 5'- aUGUGGUGCCAaugUCGUAAAUGUCAGGc -3' miRNA: 3'- cGCGUCACGGUg--GGCAUUUGCAGUUC- -5' |
|||||||
| 11304 | 5' | -52.1 | NC_003083.1 | + | 36188 | 1.11 | 0.004052 |
|
Target: 5'- cGCGCAGUGCCACCCGUAAACGUCAAGc -3' miRNA: 3'- -CGCGUCACGGUGGGCAUUUGCAGUUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home