miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11305 5' -55.8 NC_003083.1 + 85432 0.66 0.852701
Target:  5'- --aCCGCCGCCGAaaUAAUCAUCGa- -3'
miRNA:   3'- gucGGCGGCGGUUacGUUGGUAGCau -5'
11305 5' -55.8 NC_003083.1 + 28388 0.66 0.852701
Target:  5'- aCA-CCGCCGCUugguuAUGCGACCGUgcCGa- -3'
miRNA:   3'- -GUcGGCGGCGGu----UACGUUGGUA--GCau -5'
11305 5' -55.8 NC_003083.1 + 12963 0.66 0.836044
Target:  5'- aCAGCgUGCCGCCGAuUGUAAUCG-CGa- -3'
miRNA:   3'- -GUCG-GCGGCGGUU-ACGUUGGUaGCau -5'
11305 5' -55.8 NC_003083.1 + 84102 0.66 0.82654
Target:  5'- aGGUCGCCGCUAuaugGCGaguacccuauaacACCGUCGc- -3'
miRNA:   3'- gUCGGCGGCGGUua--CGU-------------UGGUAGCau -5'
11305 5' -55.8 NC_003083.1 + 87657 0.66 0.818594
Target:  5'- uCGGCCGCagGCaauUGCAACCAUUa-- -3'
miRNA:   3'- -GUCGGCGg-CGguuACGUUGGUAGcau -5'
11305 5' -55.8 NC_003083.1 + 27720 0.67 0.809592
Target:  5'- uGGCCGCCGCgCAuugGCGuuCgGUUGUAa -3'
miRNA:   3'- gUCGGCGGCG-GUua-CGUu-GgUAGCAU- -5'
11305 5' -55.8 NC_003083.1 + 100727 0.67 0.800418
Target:  5'- -cGCCGcCCGCUGAUGC-GCUAgauUCGUGc -3'
miRNA:   3'- guCGGC-GGCGGUUACGuUGGU---AGCAU- -5'
11305 5' -55.8 NC_003083.1 + 56523 0.67 0.762192
Target:  5'- -uGCCGCCGCCg--GCAAacaaAUCGUc -3'
miRNA:   3'- guCGGCGGCGGuuaCGUUgg--UAGCAu -5'
11305 5' -55.8 NC_003083.1 + 72893 0.67 0.762192
Target:  5'- aAGCCGCaGCCGAU-CAGCCAcUCGc- -3'
miRNA:   3'- gUCGGCGgCGGUUAcGUUGGU-AGCau -5'
11305 5' -55.8 NC_003083.1 + 24193 0.68 0.752301
Target:  5'- aAGCCGaUUGCCAAcGC-ACCGUCGg- -3'
miRNA:   3'- gUCGGC-GGCGGUUaCGuUGGUAGCau -5'
11305 5' -55.8 NC_003083.1 + 20739 0.68 0.721991
Target:  5'- -cGUCGCUGCCAAUGUuaacgcuGCUGUUGUGu -3'
miRNA:   3'- guCGGCGGCGGUUACGu------UGGUAGCAU- -5'
11305 5' -55.8 NC_003083.1 + 51771 0.69 0.659412
Target:  5'- cCAGCCG-CGuCCAcgGC-ACCAUCGg- -3'
miRNA:   3'- -GUCGGCgGC-GGUuaCGuUGGUAGCau -5'
11305 5' -55.8 NC_003083.1 + 30675 0.69 0.648844
Target:  5'- cCGGCCGUgucguauuUGCC-GUGCGGCCAUuCGUGu -3'
miRNA:   3'- -GUCGGCG--------GCGGuUACGUUGGUA-GCAU- -5'
11305 5' -55.8 NC_003083.1 + 107551 0.69 0.648844
Target:  5'- aAGuUCGCCGCCGGUGCGAUUggCGg- -3'
miRNA:   3'- gUC-GGCGGCGGUUACGUUGGuaGCau -5'
11305 5' -55.8 NC_003083.1 + 33618 0.7 0.638262
Target:  5'- gAGCCGCCGC----GCAuCCAUUGUAa -3'
miRNA:   3'- gUCGGCGGCGguuaCGUuGGUAGCAU- -5'
11305 5' -55.8 NC_003083.1 + 105118 0.7 0.627674
Target:  5'- gGGCUGCCGCUgcgcUGCuuGCCGUCGa- -3'
miRNA:   3'- gUCGGCGGCGGuu--ACGu-UGGUAGCau -5'
11305 5' -55.8 NC_003083.1 + 1822 0.71 0.574958
Target:  5'- -uGCCGUCGUCGGUGCAcGCCggCGUc -3'
miRNA:   3'- guCGGCGGCGGUUACGU-UGGuaGCAu -5'
11305 5' -55.8 NC_003083.1 + 100683 0.71 0.554123
Target:  5'- gUAGCUGCCGUCAaguugcuuGUGCAgaGCCGUCa-- -3'
miRNA:   3'- -GUCGGCGGCGGU--------UACGU--UGGUAGcau -5'
11305 5' -55.8 NC_003083.1 + 47506 1.06 0.002703
Target:  5'- aCAGCCGCCGCCAAUGCAACCAUCGUAc -3'
miRNA:   3'- -GUCGGCGGCGGUUACGUUGGUAGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.