Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11306 | 5' | -49.7 | NC_003083.1 | + | 62954 | 0.65 | 0.994861 |
Target: 5'- aGUCACGcUGUCAGccgccacGCGcGUGCGcACGUc -3' miRNA: 3'- -CAGUGC-ACAGUC-------UGCaCAUGCuUGUA- -5' |
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11306 | 5' | -49.7 | NC_003083.1 | + | 84646 | 0.66 | 0.990865 |
Target: 5'- cGUCGCGcaUGgccaaccuguaUCGGcGCGUGUACGAAUAa -3' miRNA: 3'- -CAGUGC--AC-----------AGUC-UGCACAUGCUUGUa -5' |
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11306 | 5' | -49.7 | NC_003083.1 | + | 91974 | 0.67 | 0.986379 |
Target: 5'- -cCGCGUacuuuGUUgaaugGGGCGUGUACGGACGc -3' miRNA: 3'- caGUGCA-----CAG-----UCUGCACAUGCUUGUa -5' |
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11306 | 5' | -49.7 | NC_003083.1 | + | 15178 | 0.67 | 0.984559 |
Target: 5'- -cCAUGgaaUCGGGCGUGUGCGAAa-- -3' miRNA: 3'- caGUGCac-AGUCUGCACAUGCUUgua -5' |
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11306 | 5' | -49.7 | NC_003083.1 | + | 58412 | 1.07 | 0.01244 |
Target: 5'- gGUCACGUGUCAGACGUGUACGAACAUa -3' miRNA: 3'- -CAGUGCACAGUCUGCACAUGCUUGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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