Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11308 | 3' | -51.2 | NC_003083.1 | + | 9276 | 0.66 | 0.982967 |
|
Target: 5'- uCAGCGcGUugCaaauaugUGUgCGGUUGGAGGGg -3' miRNA: 3'- -GUCGC-CGugGa------ACA-GCUAACCUUUCa -5' |
|||||||
| 11308 | 3' | -51.2 | NC_003083.1 | + | 56608 | 0.66 | 0.98083 |
|
Target: 5'- -cGCGcGCGCgUUGUCGGUcuGAAAGa -3' miRNA: 3'- guCGC-CGUGgAACAGCUAacCUUUCa -5' |
|||||||
| 11308 | 3' | -51.2 | NC_003083.1 | + | 8134 | 0.67 | 0.959944 |
|
Target: 5'- uGGCGGCACCg-GUCGAUUauugucguagacGGGAu-- -3' miRNA: 3'- gUCGCCGUGGaaCAGCUAA------------CCUUuca -5' |
|||||||
| 11308 | 3' | -51.2 | NC_003083.1 | + | 55437 | 0.67 | 0.956022 |
|
Target: 5'- cCGGUGuGCACCgUUGUCGGUcagUGGcuAGg -3' miRNA: 3'- -GUCGC-CGUGG-AACAGCUA---ACCuuUCa -5' |
|||||||
| 11308 | 3' | -51.2 | NC_003083.1 | + | 89734 | 0.68 | 0.94272 |
|
Target: 5'- uGGCGGCGCUUUGUgCGGUgucuauuaUGGcuAGg -3' miRNA: 3'- gUCGCCGUGGAACA-GCUA--------ACCuuUCa -5' |
|||||||
| 11308 | 3' | -51.2 | NC_003083.1 | + | 74057 | 0.7 | 0.872817 |
|
Target: 5'- -uGCGGCGUCUUGUCGAUgaaaacaugcaaaUGGAGAu- -3' miRNA: 3'- guCGCCGUGGAACAGCUA-------------ACCUUUca -5' |
|||||||
| 11308 | 3' | -51.2 | NC_003083.1 | + | 82657 | 0.7 | 0.865766 |
|
Target: 5'- aCGGCGGUugCUUGUUGAgcgUUGGcucGGUu -3' miRNA: 3'- -GUCGCCGugGAACAGCU---AACCuu-UCA- -5' |
|||||||
| 11308 | 3' | -51.2 | NC_003083.1 | + | 27844 | 0.71 | 0.832191 |
|
Target: 5'- -uGCGGCGCCggccagcgUGcgUGGUUGGGAAGa -3' miRNA: 3'- guCGCCGUGGa-------ACa-GCUAACCUUUCa -5' |
|||||||
| 11308 | 3' | -51.2 | NC_003083.1 | + | 91795 | 0.99 | 0.025329 |
|
Target: 5'- gCAGCGGCACCUUGUCGAUUGGAAGu- -3' miRNA: 3'- -GUCGCCGUGGAACAGCUAACCUUUca -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home