miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11308 5' -50 NC_003083.1 + 103047 0.66 0.993841
Target:  5'- cCGCGCUCUAg-CAAUcAAGUugGCGu -3'
miRNA:   3'- uGUGCGGGGUaaGUUGuUUCAugCGC- -5'
11308 5' -50 NC_003083.1 + 2995 0.66 0.993841
Target:  5'- uGCGCGgUUUcUUCGAUuuAGUACGCGa -3'
miRNA:   3'- -UGUGCgGGGuAAGUUGuuUCAUGCGC- -5'
11308 5' -50 NC_003083.1 + 7962 0.66 0.991753
Target:  5'- -aACGCCCCGgcgguaccgcCGACAAAcGUGCuGCGc -3'
miRNA:   3'- ugUGCGGGGUaa--------GUUGUUU-CAUG-CGC- -5'
11308 5' -50 NC_003083.1 + 20492 0.66 0.990518
Target:  5'- aGCGCGCCCCAaaUAAUAGAacccGUugGUc -3'
miRNA:   3'- -UGUGCGGGGUaaGUUGUUU----CAugCGc -5'
11308 5' -50 NC_003083.1 + 116956 0.67 0.987615
Target:  5'- cGCGCGCUCU-UUUGACu-GGUACGCu -3'
miRNA:   3'- -UGUGCGGGGuAAGUUGuuUCAUGCGc -5'
11308 5' -50 NC_003083.1 + 7115 0.67 0.987615
Target:  5'- uGCACGUuaaaCCGUUgGACGAAGgcggcCGCGa -3'
miRNA:   3'- -UGUGCGg---GGUAAgUUGUUUCau---GCGC- -5'
11308 5' -50 NC_003083.1 + 8601 0.67 0.985927
Target:  5'- gACACGUCgaCAguguuCAGAGUGCGCGc -3'
miRNA:   3'- -UGUGCGGg-GUaaguuGUUUCAUGCGC- -5'
11308 5' -50 NC_003083.1 + 94706 0.67 0.982029
Target:  5'- uCGCuGCCCCAacggUCAAUAAGGUccuCGCc -3'
miRNA:   3'- uGUG-CGGGGUa---AGUUGUUUCAu--GCGc -5'
11308 5' -50 NC_003083.1 + 32008 0.68 0.974734
Target:  5'- gACGCGCCgCAUUUggAACAGAc-GCGCGc -3'
miRNA:   3'- -UGUGCGGgGUAAG--UUGUUUcaUGCGC- -5'
11308 5' -50 NC_003083.1 + 8098 0.68 0.974734
Target:  5'- aACGCGUCCg--UCAACGGAauuguGUACGUGa -3'
miRNA:   3'- -UGUGCGGGguaAGUUGUUU-----CAUGCGC- -5'
11308 5' -50 NC_003083.1 + 11242 0.7 0.940391
Target:  5'- aACACGUCCUAgUUgGACAAA-UGCGCGc -3'
miRNA:   3'- -UGUGCGGGGU-AAgUUGUUUcAUGCGC- -5'
11308 5' -50 NC_003083.1 + 106973 0.7 0.940391
Target:  5'- cACAcCGCUCCAgUCAAC---GUACGCGu -3'
miRNA:   3'- -UGU-GCGGGGUaAGUUGuuuCAUGCGC- -5'
11308 5' -50 NC_003083.1 + 45836 0.7 0.935294
Target:  5'- uACGCGUCCCGUUCGuuCGAuucugugguggGGUuuGCGCGc -3'
miRNA:   3'- -UGUGCGGGGUAAGUu-GUU-----------UCA--UGCGC- -5'
11308 5' -50 NC_003083.1 + 51416 0.7 0.929929
Target:  5'- cGCGCGCgCUCGUUUAAU---GUGCGCGu -3'
miRNA:   3'- -UGUGCG-GGGUAAGUUGuuuCAUGCGC- -5'
11308 5' -50 NC_003083.1 + 31754 0.71 0.892113
Target:  5'- cACGCGCgCCAUUCAAaac-GUugGCa -3'
miRNA:   3'- -UGUGCGgGGUAAGUUguuuCAugCGc -5'
11308 5' -50 NC_003083.1 + 59440 0.73 0.809364
Target:  5'- -uGCGUCCCAgcgacgUUUAACAAcGUGCGCGu -3'
miRNA:   3'- ugUGCGGGGU------AAGUUGUUuCAUGCGC- -5'
11308 5' -50 NC_003083.1 + 67183 0.75 0.708773
Target:  5'- gACGCGUCUCAgcgUCAACAAuugucccauGUACGCGc -3'
miRNA:   3'- -UGUGCGGGGUa--AGUUGUUu--------CAUGCGC- -5'
11308 5' -50 NC_003083.1 + 91829 1.1 0.007008
Target:  5'- uACACGCCCCAUUCAACAAAGUACGCGg -3'
miRNA:   3'- -UGUGCGGGGUAAGUUGUUUCAUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.