miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1131 3' -54.2 NC_000942.1 + 19881 0.66 0.582706
Target:  5'- aUCGCCAucuCCgGCACcuuGGGGCAgcacaGUGGa -3'
miRNA:   3'- -GGUGGUu--GG-CGUGu--CCCCGUag---UAUC- -5'
1131 3' -54.2 NC_000942.1 + 12481 0.67 0.5373
Target:  5'- aCCACCuccUCGUAgGGGGGCGgagCAUu- -3'
miRNA:   3'- -GGUGGuu-GGCGUgUCCCCGUa--GUAuc -5'
1131 3' -54.2 NC_000942.1 + 18731 0.67 0.515048
Target:  5'- uCCACCAcuuGCCGgGcCAGGGGU-UCAa-- -3'
miRNA:   3'- -GGUGGU---UGGCgU-GUCCCCGuAGUauc -5'
1131 3' -54.2 NC_000942.1 + 30546 0.69 0.450793
Target:  5'- aCAgCGACCGCACAGcaGGGaAUUGUAGc -3'
miRNA:   3'- gGUgGUUGGCGUGUC--CCCgUAGUAUC- -5'
1131 3' -54.2 NC_000942.1 + 24438 0.69 0.420352
Target:  5'- uCgGCCAGCUGCA-AGGGcGCuUCGUAGc -3'
miRNA:   3'- -GgUGGUUGGCGUgUCCC-CGuAGUAUC- -5'
1131 3' -54.2 NC_000942.1 + 6418 0.71 0.336964
Target:  5'- gUCAUuuaCGGCCGCAUAGGGGCAa----- -3'
miRNA:   3'- -GGUG---GUUGGCGUGUCCCCGUaguauc -5'
1131 3' -54.2 NC_000942.1 + 19472 0.83 0.047285
Target:  5'- gCCACCaAACCGUcCAGGGGCcUCAUAGc -3'
miRNA:   3'- -GGUGG-UUGGCGuGUCCCCGuAGUAUC- -5'
1131 3' -54.2 NC_000942.1 + 19066 1.11 0.000433
Target:  5'- uCCACCAACCGCACAGGGGCAUCAUAGa -3'
miRNA:   3'- -GGUGGUUGGCGUGUCCCCGUAGUAUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.