miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11310 3' -52.2 NC_003083.1 + 57850 0.66 0.967058
Target:  5'- aCGUugGU-GCgUCGCCAgAUucugccccaAGGCGUCg -3'
miRNA:   3'- -GCAugCGuCG-AGUGGUaUA---------UCCGCAG- -5'
11310 3' -52.2 NC_003083.1 + 20044 0.66 0.963661
Target:  5'- aCGUA-GUGGCUUguGCCAaaUGUGcGGCGUCu -3'
miRNA:   3'- -GCAUgCGUCGAG--UGGU--AUAU-CCGCAG- -5'
11310 3' -52.2 NC_003083.1 + 55764 0.66 0.960026
Target:  5'- uCGUACGcCGGCgcgUCGCUAgcUGGuGUGUCa -3'
miRNA:   3'- -GCAUGC-GUCG---AGUGGUauAUC-CGCAG- -5'
11310 3' -52.2 NC_003083.1 + 91848 0.66 0.960026
Target:  5'- aGUACGCGGCgacggUCGCguUAUu-GCGUCu -3'
miRNA:   3'- gCAUGCGUCG-----AGUGguAUAucCGCAG- -5'
11310 3' -52.2 NC_003083.1 + 90692 0.68 0.927538
Target:  5'- uGUugaGCAGaUCACCAuUAUcGGCGUCa -3'
miRNA:   3'- gCAug-CGUCgAGUGGU-AUAuCCGCAG- -5'
11310 3' -52.2 NC_003083.1 + 38017 0.68 0.921857
Target:  5'- aCGaACGCGGCcaACCAuauUAUAGGCGa- -3'
miRNA:   3'- -GCaUGCGUCGagUGGU---AUAUCCGCag -5'
11310 3' -52.2 NC_003083.1 + 42684 0.68 0.921857
Target:  5'- uGUAaCGCGGgUCACCGUAaAGuaaacacuccGCGUCg -3'
miRNA:   3'- gCAU-GCGUCgAGUGGUAUaUC----------CGCAG- -5'
11310 3' -52.2 NC_003083.1 + 99804 0.69 0.889544
Target:  5'- --aACGC-GUUCACC-UGUGcGGCGUCg -3'
miRNA:   3'- gcaUGCGuCGAGUGGuAUAU-CCGCAG- -5'
11310 3' -52.2 NC_003083.1 + 72784 0.7 0.840093
Target:  5'- aCGUGCGCGGCcUGCCAggucgacguuUGUAgccagagcuucgucGGCGUCg -3'
miRNA:   3'- -GCAUGCGUCGaGUGGU----------AUAU--------------CCGCAG- -5'
11310 3' -52.2 NC_003083.1 + 102143 0.71 0.807093
Target:  5'- cCGUGCGC-GCguugUACguUAUGGGCGUUu -3'
miRNA:   3'- -GCAUGCGuCGa---GUGguAUAUCCGCAG- -5'
11310 3' -52.2 NC_003083.1 + 109659 1.1 0.004025
Target:  5'- gCGUACGCAGCUCACCAUAUAGGCGUCu -3'
miRNA:   3'- -GCAUGCGUCGAGUGGUAUAUCCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.