Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11312 | 3' | -52.1 | NC_003083.1 | + | 24115 | 0.66 | 0.955386 |
Target: 5'- -cACGCCGUGCGUuGCA---GAUGCa -3' miRNA: 3'- guUGCGGCGUGCGuCGUucuUUACGa -5' |
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11312 | 3' | -52.1 | NC_003083.1 | + | 98965 | 0.66 | 0.966536 |
Target: 5'- gAGCGCgCGUACGCAGCuaauu-UGUa -3' miRNA: 3'- gUUGCG-GCGUGCGUCGuucuuuACGa -5' |
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11312 | 3' | -52.1 | NC_003083.1 | + | 109522 | 0.66 | 0.95935 |
Target: 5'- aCGAUGCCGCGC-CAaCAacAGGGAUGUUa -3' miRNA: 3'- -GUUGCGGCGUGcGUcGU--UCUUUACGA- -5' |
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11312 | 3' | -52.1 | NC_003083.1 | + | 52359 | 0.66 | 0.955386 |
Target: 5'- aCAACG-CGUugGUGGCc-GAAAUGCa -3' miRNA: 3'- -GUUGCgGCGugCGUCGuuCUUUACGa -5' |
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11312 | 3' | -52.1 | NC_003083.1 | + | 99663 | 0.66 | 0.965861 |
Target: 5'- aCGACGCCGCACaGguGaacgcguuAGUGCUu -3' miRNA: 3'- -GUUGCGGCGUG-CguCguucu---UUACGA- -5' |
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11312 | 3' | -52.1 | NC_003083.1 | + | 18342 | 0.66 | 0.963065 |
Target: 5'- aCAGCGCCG-GCGUacaAGCAAGAcaaaucuuUGCg -3' miRNA: 3'- -GUUGCGGCgUGCG---UCGUUCUuu------ACGa -5' |
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11312 | 3' | -52.1 | NC_003083.1 | + | 41145 | 0.66 | 0.95935 |
Target: 5'- -cGCGCCGCACcauuacgccguGCuuGCAuauAGAAAUGUa -3' miRNA: 3'- guUGCGGCGUG-----------CGu-CGU---UCUUUACGa -5' |
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11312 | 3' | -52.1 | NC_003083.1 | + | 45657 | 0.66 | 0.951601 |
Target: 5'- aAACGCCaGCGCGCGGCuguaauacuuUGCc -3' miRNA: 3'- gUUGCGG-CGUGCGUCGuucuuu----ACGa -5' |
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11312 | 3' | -52.1 | NC_003083.1 | + | 30381 | 0.66 | 0.951168 |
Target: 5'- aUAugGCCauuGUGCGCGGCGGuGucGUGCUg -3' miRNA: 3'- -GUugCGG---CGUGCGUCGUU-CuuUACGA- -5' |
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11312 | 3' | -52.1 | NC_003083.1 | + | 44192 | 0.66 | 0.963065 |
Target: 5'- aGAgGCCGCcaGCGCAGCAcAGuacAUGUUc -3' miRNA: 3'- gUUgCGGCG--UGCGUCGU-UCuu-UACGA- -5' |
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11312 | 3' | -52.1 | NC_003083.1 | + | 56918 | 0.66 | 0.955386 |
Target: 5'- gCGGCGCCGaCACGCucGGCAA-AGAcGCa -3' miRNA: 3'- -GUUGCGGC-GUGCG--UCGUUcUUUaCGa -5' |
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11312 | 3' | -52.1 | NC_003083.1 | + | 88259 | 0.66 | 0.95935 |
Target: 5'- -cGCGCaaaCGCAgCGCAGCGGGcgcGGUGCc -3' miRNA: 3'- guUGCG---GCGU-GCGUCGUUCu--UUACGa -5' |
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11312 | 3' | -52.1 | NC_003083.1 | + | 115407 | 0.67 | 0.936947 |
Target: 5'- aCGGCGCCaCugGCAGCucguuGAAA-GCa -3' miRNA: 3'- -GUUGCGGcGugCGUCGuu---CUUUaCGa -5' |
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11312 | 3' | -52.1 | NC_003083.1 | + | 100724 | 0.67 | 0.931675 |
Target: 5'- uGGCGCCGCcCGCugauGCGcuAGAuucGUGCg -3' miRNA: 3'- gUUGCGGCGuGCGu---CGU--UCUu--UACGa -5' |
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11312 | 3' | -52.1 | NC_003083.1 | + | 105049 | 0.67 | 0.926136 |
Target: 5'- gGGCGUCGUGCGUuggauguuguGCcGGAAGUGCUc -3' miRNA: 3'- gUUGCGGCGUGCGu---------CGuUCUUUACGA- -5' |
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11312 | 3' | -52.1 | NC_003083.1 | + | 82385 | 0.67 | 0.928384 |
Target: 5'- gAGCGCCGCACauuuuuGCAAGAAGgucaacuuagccgauUGCa -3' miRNA: 3'- gUUGCGGCGUGcgu---CGUUCUUU---------------ACGa -5' |
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11312 | 3' | -52.1 | NC_003083.1 | + | 59211 | 0.67 | 0.941951 |
Target: 5'- cCAGCGCCGUuaaACGC-GCAu-GGGUGCg -3' miRNA: 3'- -GUUGCGGCG---UGCGuCGUucUUUACGa -5' |
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11312 | 3' | -52.1 | NC_003083.1 | + | 10404 | 0.68 | 0.897211 |
Target: 5'- -cACGUCGCACGCAucuuguggcaguuuuGCAAauAAUGCUc -3' miRNA: 3'- guUGCGGCGUGCGU---------------CGUUcuUUACGA- -5' |
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11312 | 3' | -52.1 | NC_003083.1 | + | 27836 | 0.68 | 0.901301 |
Target: 5'- aUAACGuuGCACGCAaauuuGaCAAGAuuUGCc -3' miRNA: 3'- -GUUGCggCGUGCGU-----C-GUUCUuuACGa -5' |
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11312 | 3' | -52.1 | NC_003083.1 | + | 94579 | 0.68 | 0.914251 |
Target: 5'- -cACGCCGCAgCGCcacgaccgauuGCAAGuguGAUGCg -3' miRNA: 3'- guUGCGGCGU-GCGu----------CGUUCu--UUACGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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