Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11313 | 3' | -56.9 | NC_003084.1 | + | 98719 | 0.66 | 0.803123 |
|
Target: 5'- uGGGCCaUGGCcgCuuuGGAUCUCGCa- -3' miRNA: 3'- -CCCGGaGCCGaaGuu-CCUAGGGUGcc -5' |
|||||||
| 11313 | 3' | -56.9 | NC_003084.1 | + | 1831 | 0.67 | 0.775632 |
|
Target: 5'- cGGGaCUUGGCUaCAAGGAUggCACGa -3' miRNA: 3'- -CCCgGAGCCGAaGUUCCUAggGUGCc -5' |
|||||||
| 11313 | 3' | -56.9 | NC_003084.1 | + | 9543 | 0.67 | 0.775632 |
|
Target: 5'- uGGGgCUCGGCUaCAGGuGGUgCUACa- -3' miRNA: 3'- -CCCgGAGCCGAaGUUC-CUAgGGUGcc -5' |
|||||||
| 11313 | 3' | -56.9 | NC_003084.1 | + | 63151 | 0.7 | 0.594912 |
|
Target: 5'- uGGGCCUCGaCcUCAAGGGUUacagUUACGGu -3' miRNA: 3'- -CCCGGAGCcGaAGUUCCUAG----GGUGCC- -5' |
|||||||
| 11313 | 3' | -56.9 | NC_003084.1 | + | 81909 | 0.71 | 0.574514 |
|
Target: 5'- uGGCUUCGGUcagguugaUCAGGGugCCCACGGc -3' miRNA: 3'- cCCGGAGCCGa-------AGUUCCuaGGGUGCC- -5' |
|||||||
| 11313 | 3' | -56.9 | NC_003084.1 | + | 7047 | 1.12 | 0.0012 |
|
Target: 5'- cGGGCCUCGGCUUCAAGGAUCCCACGGc -3' miRNA: 3'- -CCCGGAGCCGAAGUUCCUAGGGUGCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home