miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11313 5' -54.4 NC_003084.1 + 100950 0.66 0.887663
Target:  5'- cGCCGCAucGGUGUacgaaGGCUGcAGUCa -3'
miRNA:   3'- aCGGCGUu-CCACAgg---UCGGCuUUAGc -5'
11313 5' -54.4 NC_003084.1 + 103418 0.66 0.880456
Target:  5'- cGCC-CGAGG--UCCGGCacCGAAAUCGu -3'
miRNA:   3'- aCGGcGUUCCacAGGUCG--GCUUUAGC- -5'
11313 5' -54.4 NC_003084.1 + 54921 0.7 0.727633
Target:  5'- cGCCcggacgGUGAGGUGUgCAGCCGGuucUCGu -3'
miRNA:   3'- aCGG------CGUUCCACAgGUCGGCUuu-AGC- -5'
11313 5' -54.4 NC_003084.1 + 41288 0.71 0.63328
Target:  5'- aUGCUGCuAGGU-UCCAGCCGAGc--- -3'
miRNA:   3'- -ACGGCGuUCCAcAGGUCGGCUUuagc -5'
11313 5' -54.4 NC_003084.1 + 60823 0.72 0.577221
Target:  5'- cGCCGCGAGGUGguacggauguucacUCCGGCCa------ -3'
miRNA:   3'- aCGGCGUUCCAC--------------AGGUCGGcuuuagc -5'
11313 5' -54.4 NC_003084.1 + 60841 0.73 0.518258
Target:  5'- aUGUCGgaCAGcGG-GUCCAGCCGAAGUUGa -3'
miRNA:   3'- -ACGGC--GUU-CCaCAGGUCGGCUUUAGC- -5'
11313 5' -54.4 NC_003084.1 + 7013 1.08 0.002948
Target:  5'- gUGCCGCAAGGUGUCCAGCCGAAAUCGc -3'
miRNA:   3'- -ACGGCGUUCCACAGGUCGGCUUUAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.