miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11314 3' -57.6 NC_003084.1 + 66234 0.66 0.745293
Target:  5'- aCUGCGGCUuucgaugaggacgacGAACCGcaaGuCCAGAGCa- -3'
miRNA:   3'- -GACGUCGA---------------CUUGGCc--CuGGUCUCGac -5'
11314 3' -57.6 NC_003084.1 + 53502 0.66 0.731314
Target:  5'- aCUGCgAGUUGGAgUGGGG-CGGAGCg- -3'
miRNA:   3'- -GACG-UCGACUUgGCCCUgGUCUCGac -5'
11314 3' -57.6 NC_003084.1 + 51209 0.67 0.714105
Target:  5'- aUGUggugAGCUGAACCGGGGCUccauauagauuagAuuggguaaaugugguGAGCUGg -3'
miRNA:   3'- gACG----UCGACUUGGCCCUGG-------------U---------------CUCGAC- -5'
11314 3' -57.6 NC_003084.1 + 69153 0.67 0.700801
Target:  5'- uUGgAGCUGAaaaaguugaaACUGGGAUCgGGGGUUGg -3'
miRNA:   3'- gACgUCGACU----------UGGCCCUGG-UCUCGAC- -5'
11314 3' -57.6 NC_003084.1 + 28342 0.67 0.700801
Target:  5'- aUGCAGCc---CCGGGGCguGuGGCUGa -3'
miRNA:   3'- gACGUCGacuuGGCCCUGguC-UCGAC- -5'
11314 3' -57.6 NC_003084.1 + 26802 0.67 0.690496
Target:  5'- -cGUAGCUGGACCacGGAaaCCAGcucAGCUGu -3'
miRNA:   3'- gaCGUCGACUUGGc-CCU--GGUC---UCGAC- -5'
11314 3' -57.6 NC_003084.1 + 38766 0.68 0.638395
Target:  5'- gCUGCAcacccGCggGAACCGGGGCUgccgAGAGUg- -3'
miRNA:   3'- -GACGU-----CGa-CUUGGCCCUGG----UCUCGac -5'
11314 3' -57.6 NC_003084.1 + 105320 0.69 0.53477
Target:  5'- -aGUA-CUGcGACCGGGugauACCGGAGCUGg -3'
miRNA:   3'- gaCGUcGAC-UUGGCCC----UGGUCUCGAC- -5'
11314 3' -57.6 NC_003084.1 + 80120 0.7 0.514646
Target:  5'- aCUGCAGUucggccgauuUGAACCGGucGGCCAG-GUUGu -3'
miRNA:   3'- -GACGUCG----------ACUUGGCC--CUGGUCuCGAC- -5'
11314 3' -57.6 NC_003084.1 + 85378 0.71 0.475382
Target:  5'- aUGCAGUUGGGCCGGGcGCgAGuaaAGCUc -3'
miRNA:   3'- gACGUCGACUUGGCCC-UGgUC---UCGAc -5'
11314 3' -57.6 NC_003084.1 + 5727 0.71 0.437668
Target:  5'- -aGCAcCUGAugCGGGGCCcGGGCUu -3'
miRNA:   3'- gaCGUcGACUugGCCCUGGuCUCGAc -5'
11314 3' -57.6 NC_003084.1 + 11242 0.72 0.419466
Target:  5'- -aGCAGCUGAAgCGGGAggaaaUGGAGCUc -3'
miRNA:   3'- gaCGUCGACUUgGCCCUg----GUCUCGAc -5'
11314 3' -57.6 NC_003084.1 + 87220 0.72 0.393043
Target:  5'- --aCAGCUGAACCuGGACCuGGAGaCUGa -3'
miRNA:   3'- gacGUCGACUUGGcCCUGG-UCUC-GAC- -5'
11314 3' -57.6 NC_003084.1 + 45854 0.74 0.32054
Target:  5'- uCUGCGGCuUGGGCUGGacCCGGGGCUGc -3'
miRNA:   3'- -GACGUCG-ACUUGGCCcuGGUCUCGAC- -5'
11314 3' -57.6 NC_003084.1 + 7642 1.07 0.001634
Target:  5'- uCUGCAGCUGAACCGGGACCAGAGCUGc -3'
miRNA:   3'- -GACGUCGACUUGGCCCUGGUCUCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.