miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11315 3' -47.9 NC_003084.1 + 62776 0.66 0.998193
Target:  5'- ---aGCUGaagGUGAGUG-GGGUGGACCc -3'
miRNA:   3'- auagUGAUa--CAUUCGUgCUCACCUGG- -5'
11315 3' -47.9 NC_003084.1 + 60635 0.66 0.998193
Target:  5'- aGUCGCUGUGUAgggcGGCAC-AGcGGGUCa -3'
miRNA:   3'- aUAGUGAUACAU----UCGUGcUCaCCUGG- -5'
11315 3' -47.9 NC_003084.1 + 68975 0.66 0.997818
Target:  5'- ------aAUGUGAGCAccacucauguCGGGUGGACUu -3'
miRNA:   3'- auagugaUACAUUCGU----------GCUCACCUGG- -5'
11315 3' -47.9 NC_003084.1 + 92578 0.66 0.997777
Target:  5'- --cCGCUAcuu-AGCACGAcuuuaccGUGGACCc -3'
miRNA:   3'- auaGUGAUacauUCGUGCU-------CACCUGG- -5'
11315 3' -47.9 NC_003084.1 + 65469 0.66 0.99738
Target:  5'- --cCACcguugGUGuGC-CGAGUGGGCCu -3'
miRNA:   3'- auaGUGaua--CAUuCGuGCUCACCUGG- -5'
11315 3' -47.9 NC_003084.1 + 23371 0.67 0.996284
Target:  5'- uUAUCGaauCUGacccGUAccGCACGGGUGGACUa -3'
miRNA:   3'- -AUAGU---GAUa---CAUu-CGUGCUCACCUGG- -5'
11315 3' -47.9 NC_003084.1 + 34574 0.67 0.994835
Target:  5'- gAUCGCUAUGgacuCACGAcUGGugCu -3'
miRNA:   3'- aUAGUGAUACauucGUGCUcACCugG- -5'
11315 3' -47.9 NC_003084.1 + 79225 0.68 0.991837
Target:  5'- --gCACcGUGuUGAGCACGuuuAGUGuGGCCg -3'
miRNA:   3'- auaGUGaUAC-AUUCGUGC---UCAC-CUGG- -5'
11315 3' -47.9 NC_003084.1 + 49533 0.68 0.990577
Target:  5'- --gUACcg-GUGAGCugGGGUGGugguGCCa -3'
miRNA:   3'- auaGUGauaCAUUCGugCUCACC----UGG- -5'
11315 3' -47.9 NC_003084.1 + 36435 0.68 0.990443
Target:  5'- --gCGCUAUcUAAGCGCGAagcaacuGcUGGACCu -3'
miRNA:   3'- auaGUGAUAcAUUCGUGCU-------C-ACCUGG- -5'
11315 3' -47.9 NC_003084.1 + 80131 0.68 0.989168
Target:  5'- -cUCGCUGg--GAGCACGcauuggucgcauGGUGGugCa -3'
miRNA:   3'- auAGUGAUacaUUCGUGC------------UCACCugG- -5'
11315 3' -47.9 NC_003084.1 + 82485 0.68 0.987601
Target:  5'- -cUCAUcg-GcAAGC-CGAGUGGACCc -3'
miRNA:   3'- auAGUGauaCaUUCGuGCUCACCUGG- -5'
11315 3' -47.9 NC_003084.1 + 61323 0.68 0.985865
Target:  5'- --aCACUGUucuugGUGAGcCACGGGUuGGCCg -3'
miRNA:   3'- auaGUGAUA-----CAUUC-GUGCUCAcCUGG- -5'
11315 3' -47.9 NC_003084.1 + 34095 0.69 0.979771
Target:  5'- uUAUCACggccgcuucGC-CGAGUGGACCu -3'
miRNA:   3'- -AUAGUGauacauu--CGuGCUCACCUGG- -5'
11315 3' -47.9 NC_003084.1 + 68742 0.7 0.971298
Target:  5'- -uUCGCUGUGUuAGCACGAccgacaccggGUccacuuucgugGGGCCg -3'
miRNA:   3'- auAGUGAUACAuUCGUGCU----------CA-----------CCUGG- -5'
11315 3' -47.9 NC_003084.1 + 51157 0.71 0.952708
Target:  5'- gGUaaaUGUgGUGAGCugGAGUGGugCu -3'
miRNA:   3'- aUAgugAUA-CAUUCGugCUCACCugG- -5'
11315 3' -47.9 NC_003084.1 + 106427 0.71 0.943409
Target:  5'- --cCACUGUGUGGGaccugUGGGUGGACa -3'
miRNA:   3'- auaGUGAUACAUUCgu---GCUCACCUGg -5'
11315 3' -47.9 NC_003084.1 + 94431 0.72 0.926782
Target:  5'- cAUCugUggGUAaacugguGGUACGAGUGGAgCg -3'
miRNA:   3'- aUAGugAuaCAU-------UCGUGCUCACCUgG- -5'
11315 3' -47.9 NC_003084.1 + 16648 0.72 0.921445
Target:  5'- gGUCGCUGU-UGAGCAgaUGGGUGG-CCa -3'
miRNA:   3'- aUAGUGAUAcAUUCGU--GCUCACCuGG- -5'
11315 3' -47.9 NC_003084.1 + 2201 0.73 0.887655
Target:  5'- --gUACUAcaUGUAccGGCACGAuaccGUGGGCCa -3'
miRNA:   3'- auaGUGAU--ACAU--UCGUGCU----CACCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.