Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11316 | 5' | -54.7 | NC_003084.1 | + | 61280 | 0.67 | 0.810994 |
|
Target: 5'- gGGUGCaccGAGCggUGGCGUGGUGgucGUGUa -3' miRNA: 3'- -UCGCGa--CUCGgaAUCGCACCGU---UACA- -5' |
|||||||
| 11316 | 5' | -54.7 | NC_003084.1 | + | 10049 | 0.68 | 0.752813 |
|
Target: 5'- cGgGUUGAGCCgaGGU-UGGCGGUGUg -3' miRNA: 3'- uCgCGACUCGGaaUCGcACCGUUACA- -5' |
|||||||
| 11316 | 5' | -54.7 | NC_003084.1 | + | 79229 | 0.69 | 0.711533 |
|
Target: 5'- cGUGUUGAGCacguUUAGUGUGGCcgaaacGGUGUa -3' miRNA: 3'- uCGCGACUCGg---AAUCGCACCG------UUACA- -5' |
|||||||
| 11316 | 5' | -54.7 | NC_003084.1 | + | 102069 | 0.69 | 0.711533 |
|
Target: 5'- cGGCGC-GAGCCgcGGUGaUGGCAAcGUu -3' miRNA: 3'- -UCGCGaCUCGGaaUCGC-ACCGUUaCA- -5' |
|||||||
| 11316 | 5' | -54.7 | NC_003084.1 | + | 534 | 0.69 | 0.67975 |
|
Target: 5'- aAGCGCUGAGCgUUGGCcucaGCAcgGg -3' miRNA: 3'- -UCGCGACUCGgAAUCGcac-CGUuaCa -5' |
|||||||
| 11316 | 5' | -54.7 | NC_003084.1 | + | 29516 | 0.71 | 0.593801 |
|
Target: 5'- cGGCGCUGuacGGUCUUGGCGguucagucGGCAAUa- -3' miRNA: 3'- -UCGCGAC---UCGGAAUCGCa-------CCGUUAca -5' |
|||||||
| 11316 | 5' | -54.7 | NC_003084.1 | + | 14684 | 1.07 | 0.002899 |
|
Target: 5'- uAGCGCUGAGCCUUAGCGUGGCAAUGUu -3' miRNA: 3'- -UCGCGACUCGGAAUCGCACCGUUACA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home