miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11317 3' -54.2 NC_003084.1 + 77591 0.66 0.922324
Target:  5'- --aUACUcuaauuggggACUGuuuuCCGUCGGUGCuACGAg -3'
miRNA:   3'- guaAUGG----------UGGCu---GGCAGCCACG-UGCU- -5'
11317 3' -54.2 NC_003084.1 + 9635 0.66 0.916532
Target:  5'- aCAUUGCCACgGGacCCGUgGGUGaacCugGGg -3'
miRNA:   3'- -GUAAUGGUGgCU--GGCAgCCAC---GugCU- -5'
11317 3' -54.2 NC_003084.1 + 90836 0.66 0.916532
Target:  5'- --cUAUCGCCcACCGUUGGUGUguaaccgaacGCGGc -3'
miRNA:   3'- guaAUGGUGGcUGGCAGCCACG----------UGCU- -5'
11317 3' -54.2 NC_003084.1 + 472 0.66 0.91049
Target:  5'- -----aCACCGAaaccCCGUUGGcGCACGGc -3'
miRNA:   3'- guaaugGUGGCU----GGCAGCCaCGUGCU- -5'
11317 3' -54.2 NC_003084.1 + 17538 0.67 0.890883
Target:  5'- -----gCACCGACgGUCGGUGguaAUGAg -3'
miRNA:   3'- guaaugGUGGCUGgCAGCCACg--UGCU- -5'
11317 3' -54.2 NC_003084.1 + 25150 0.67 0.890883
Target:  5'- ---gACCAC--ACCGuUCGGUGCACa- -3'
miRNA:   3'- guaaUGGUGgcUGGC-AGCCACGUGcu -5'
11317 3' -54.2 NC_003084.1 + 95489 0.67 0.87661
Target:  5'- aGUUACCACgauaCGGCCGUCcaguGGUGCucCGu -3'
miRNA:   3'- gUAAUGGUG----GCUGGCAG----CCACGu-GCu -5'
11317 3' -54.2 NC_003084.1 + 18077 0.67 0.87661
Target:  5'- ---aACCGgCGACCGUUGcGUaGUACGGu -3'
miRNA:   3'- guaaUGGUgGCUGGCAGC-CA-CGUGCU- -5'
11317 3' -54.2 NC_003084.1 + 16708 0.67 0.87661
Target:  5'- -uUUGCCACCcGCUGUCGGUugaGUuuaugGCGAu -3'
miRNA:   3'- guAAUGGUGGcUGGCAGCCA---CG-----UGCU- -5'
11317 3' -54.2 NC_003084.1 + 64190 0.68 0.861418
Target:  5'- --gUGCCcacuuuCCGGCCGUCGGaucaGUGCGGc -3'
miRNA:   3'- guaAUGGu-----GGCUGGCAGCCa---CGUGCU- -5'
11317 3' -54.2 NC_003084.1 + 23247 0.68 0.837014
Target:  5'- --gUACgACCgGGCCuucaagCGGUGCGCGAu -3'
miRNA:   3'- guaAUGgUGG-CUGGca----GCCACGUGCU- -5'
11317 3' -54.2 NC_003084.1 + 91559 0.69 0.783148
Target:  5'- ---aACCACCGGUgGUCcgcuccugcgaGGUGCGCGAa -3'
miRNA:   3'- guaaUGGUGGCUGgCAG-----------CCACGUGCU- -5'
11317 3' -54.2 NC_003084.1 + 81141 0.69 0.773616
Target:  5'- ---gGCCGCCGACCGUaGGU-CAuCGAu -3'
miRNA:   3'- guaaUGGUGGCUGGCAgCCAcGU-GCU- -5'
11317 3' -54.2 NC_003084.1 + 61141 0.7 0.763952
Target:  5'- aCAcgACCACCacgccACCGcUCGGUGCACc- -3'
miRNA:   3'- -GUaaUGGUGGc----UGGC-AGCCACGUGcu -5'
11317 3' -54.2 NC_003084.1 + 59073 0.71 0.703724
Target:  5'- --cUGCUGCUaGACCGUgaacaGGUGCGCGAa -3'
miRNA:   3'- guaAUGGUGG-CUGGCAg----CCACGUGCU- -5'
11317 3' -54.2 NC_003084.1 + 99656 0.71 0.662167
Target:  5'- ---cGCCACCGGCCGUaagcCGGU-CACGu -3'
miRNA:   3'- guaaUGGUGGCUGGCA----GCCAcGUGCu -5'
11317 3' -54.2 NC_003084.1 + 103898 0.72 0.620198
Target:  5'- gGUUACCACCGGCgGaccUGcGUGUACGAa -3'
miRNA:   3'- gUAAUGGUGGCUGgCa--GC-CACGUGCU- -5'
11317 3' -54.2 NC_003084.1 + 10259 0.74 0.497076
Target:  5'- --gUACCGCaCGACuCGaaGGUGCACGAc -3'
miRNA:   3'- guaAUGGUG-GCUG-GCagCCACGUGCU- -5'
11317 3' -54.2 NC_003084.1 + 67208 0.76 0.439613
Target:  5'- ---cACCACCGugaucuGCgCGUCGGUGUGCGAu -3'
miRNA:   3'- guaaUGGUGGC------UG-GCAGCCACGUGCU- -5'
11317 3' -54.2 NC_003084.1 + 52725 0.78 0.32182
Target:  5'- aAUUGCCGCUGuacCCGaugaauUCGGUGCACGAg -3'
miRNA:   3'- gUAAUGGUGGCu--GGC------AGCCACGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.