miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1132 3' -47.7 NC_000942.1 + 20682 0.67 0.921056
Target:  5'- aUACCuugGGUAAUGUUACC---GGUGUGGc -3'
miRNA:   3'- -GUGG---CCAUUGUAAUGGguuCCAUACC- -5'
1132 3' -47.7 NC_000942.1 + 30043 0.68 0.881709
Target:  5'- -cCCGGgGACAUgggacuuggcggugUGCCCGGGGacAUGGg -3'
miRNA:   3'- guGGCCaUUGUA--------------AUGGGUUCCa-UACC- -5'
1132 3' -47.7 NC_000942.1 + 29962 0.68 0.875
Target:  5'- -cCCGGgGACAUgggacuggcggugUGCCCGGGGacAUGGg -3'
miRNA:   3'- guGGCCaUUGUA-------------AUGGGUUCCa-UACC- -5'
1132 3' -47.7 NC_000942.1 + 9656 0.68 0.8583
Target:  5'- cCACCGGUGGCcgUcagcGCgCCAGGcGUAacuUGGc -3'
miRNA:   3'- -GUGGCCAUUGuaA----UG-GGUUC-CAU---ACC- -5'
1132 3' -47.7 NC_000942.1 + 20628 1.13 0.001714
Target:  5'- aCACCGGUAACAUUACCCAAGGUAUGGg -3'
miRNA:   3'- -GUGGCCAUUGUAAUGGGUUCCAUACC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.