miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11320 5' -54.8 NC_003084.1 + 38401 0.66 0.891117
Target:  5'- aCCuuUGGguaGCUGCAUgGCggCGAGGUa -3'
miRNA:   3'- cGGcgACCa--CGACGUA-UGuaGCUCCG- -5'
11320 5' -54.8 NC_003084.1 + 80129 0.66 0.891117
Target:  5'- aGCuCGCUGGgaGCacGCAUugGUCGcauGGUg -3'
miRNA:   3'- -CG-GCGACCa-CGa-CGUAugUAGCu--CCG- -5'
11320 5' -54.8 NC_003084.1 + 100347 0.66 0.891117
Target:  5'- gGgCGCUGGagcgGCUGCGUguGCGUCuugauGGGGa -3'
miRNA:   3'- -CgGCGACCa---CGACGUA--UGUAG-----CUCCg -5'
11320 5' -54.8 NC_003084.1 + 23523 0.66 0.884044
Target:  5'- aCCGCUGGUGCU-CAU-CcUCGGGa- -3'
miRNA:   3'- cGGCGACCACGAcGUAuGuAGCUCcg -5'
11320 5' -54.8 NC_003084.1 + 59072 0.67 0.853418
Target:  5'- uGCUGCUagaccgugaacaGGUGC-GCGaACGUUGuGGCa -3'
miRNA:   3'- -CGGCGA------------CCACGaCGUaUGUAGCuCCG- -5'
11320 5' -54.8 NC_003084.1 + 54134 0.68 0.801217
Target:  5'- uGCUGCUGcUGCUGUcUGCGUUcacGGGCc -3'
miRNA:   3'- -CGGCGACcACGACGuAUGUAGc--UCCG- -5'
11320 5' -54.8 NC_003084.1 + 63858 0.68 0.79189
Target:  5'- cGCUGCUGGUGCUGgaaacgagcaGUGCAaCGAauucGCa -3'
miRNA:   3'- -CGGCGACCACGACg---------UAUGUaGCUc---CG- -5'
11320 5' -54.8 NC_003084.1 + 90381 0.69 0.743143
Target:  5'- aCCGCUGGUggGCUGCAUaaauuuaaACAugaUCGAaucGGUg -3'
miRNA:   3'- cGGCGACCA--CGACGUA--------UGU---AGCU---CCG- -5'
11320 5' -54.8 NC_003084.1 + 3303 0.69 0.722845
Target:  5'- uCCGCUGGUGCUGCugGUGCugcUGcuGCu -3'
miRNA:   3'- cGGCGACCACGACG--UAUGua-GCucCG- -5'
11320 5' -54.8 NC_003084.1 + 104835 0.69 0.712565
Target:  5'- uCCGCaUGGUGgaGCGUGUAUcCGAGGa -3'
miRNA:   3'- cGGCG-ACCACgaCGUAUGUA-GCUCCg -5'
11320 5' -54.8 NC_003084.1 + 86951 0.71 0.628522
Target:  5'- uGCCGCUGcaGCUGCAacuguuCAUCGAG-Ca -3'
miRNA:   3'- -CGGCGACcaCGACGUau----GUAGCUCcG- -5'
11320 5' -54.8 NC_003084.1 + 68423 0.71 0.5968
Target:  5'- aCCgGUUGGUGgUGCAcuuCAUCGAGGg -3'
miRNA:   3'- cGG-CGACCACgACGUau-GUAGCUCCg -5'
11320 5' -54.8 NC_003084.1 + 91843 0.72 0.534302
Target:  5'- uGCUGCUGcUGCUGCGgcUGCAUgGuGGUg -3'
miRNA:   3'- -CGGCGACcACGACGU--AUGUAgCuCCG- -5'
11320 5' -54.8 NC_003084.1 + 25859 1.13 0.001208
Target:  5'- gGCCGCUGGUGCUGCAUACAUCGAGGCu -3'
miRNA:   3'- -CGGCGACCACGACGUAUGUAGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.