miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11322 5' -53 NC_003084.1 + 29118 0.66 0.958085
Target:  5'- aGGAUGACgGAaaaacacgccuuuCAGAUCCGauuacggcGGUGCUg -3'
miRNA:   3'- -CCUGCUGgCU-------------GUCUAGGUga------UCACGA- -5'
11322 5' -53 NC_003084.1 + 59588 0.66 0.941253
Target:  5'- gGGACGACUccucggugGACAcGAgcuaCAUUGGUGCa -3'
miRNA:   3'- -CCUGCUGG--------CUGU-CUag--GUGAUCACGa -5'
11322 5' -53 NC_003084.1 + 85596 0.67 0.919985
Target:  5'- aGuCGGCCGAacugcccGGUCCGCUGGUGg- -3'
miRNA:   3'- cCuGCUGGCUgu-----CUAGGUGAUCACga -5'
11322 5' -53 NC_003084.1 + 20008 0.67 0.914026
Target:  5'- -aACGugUaGAUGGGUCCAgUGGUGCg -3'
miRNA:   3'- ccUGCugG-CUGUCUAGGUgAUCACGa -5'
11322 5' -53 NC_003084.1 + 98734 0.67 0.907812
Target:  5'- -uGCGACCGAUcccaGGGUgCACUGGaGCUc -3'
miRNA:   3'- ccUGCUGGCUG----UCUAgGUGAUCaCGA- -5'
11322 5' -53 NC_003084.1 + 106452 0.68 0.887663
Target:  5'- uGGCGAguuugccucacCCGACGGAca-ACUGGUGCUa -3'
miRNA:   3'- cCUGCU-----------GGCUGUCUaggUGAUCACGA- -5'
11322 5' -53 NC_003084.1 + 88700 0.68 0.880456
Target:  5'- aGAUGACCGAU-GA-CCaACUGGUGCc -3'
miRNA:   3'- cCUGCUGGCUGuCUaGG-UGAUCACGa -5'
11322 5' -53 NC_003084.1 + 14557 0.68 0.873012
Target:  5'- cGGugGACCGACGcGggCCGaggucGUGCa -3'
miRNA:   3'- -CCugCUGGCUGU-CuaGGUgau--CACGa -5'
11322 5' -53 NC_003084.1 + 94844 0.69 0.865336
Target:  5'- cGGCGGCCGGCcgcaaAGGUUCGCcaauGUGCg -3'
miRNA:   3'- cCUGCUGGCUG-----UCUAGGUGau--CACGa -5'
11322 5' -53 NC_003084.1 + 68729 0.7 0.805689
Target:  5'- -cACGACCGACaccGGGUCCACUuucGUGg- -3'
miRNA:   3'- ccUGCUGGCUG---UCUAGGUGAu--CACga -5'
11322 5' -53 NC_003084.1 + 14963 0.7 0.805689
Target:  5'- uGGACGAUUGauGCGGcgCCACgcuacAGUGCg -3'
miRNA:   3'- -CCUGCUGGC--UGUCuaGGUGa----UCACGa -5'
11322 5' -53 NC_003084.1 + 29281 0.7 0.796421
Target:  5'- uGGACGcACgGACAGuuuGUUCACguugAGUGCa -3'
miRNA:   3'- -CCUGC-UGgCUGUC---UAGGUGa---UCACGa -5'
11322 5' -53 NC_003084.1 + 28510 1.11 0.003034
Target:  5'- aGGACGACCGACAGAUCCACUAGUGCUa -3'
miRNA:   3'- -CCUGCUGGCUGUCUAGGUGAUCACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.