miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
11323	5'	-53.2	NC_003084.1	+	30942	0.66	0.92903
	Target:  5'- aGUUUCGGuCAcgaacGUGUGACC-CGCGCCGu -3' miRNA:   3'- -CGAAGUU-GU-----CGUACUGGaGCGCGGUc -5'
11323	5'	-53.2	NC_003084.1	+	84616	0.66	0.92903
	Target:  5'- uGCUUCGagaACGGCAgGACUcC-CGCCGGu -3' miRNA:   3'- -CGAAGU---UGUCGUaCUGGaGcGCGGUC- -5'
11323	5'	-53.2	NC_003084.1	+	81023	0.67	0.91142
	Target:  5'- uGCUUgAGCAGCAUcuCgaUGUGCCAGu -3' miRNA:   3'- -CGAAgUUGUCGUAcuGgaGCGCGGUC- -5'
11323	5'	-53.2	NC_003084.1	+	3113	0.67	0.905028
	Target:  5'- aGCUgCAccGCAGCGUGACCa-GCuuaguuuuuGCCGGg -3' miRNA:   3'- -CGAaGU--UGUCGUACUGGagCG---------CGGUC- -5'
11323	5'	-53.2	NC_003084.1	+	6040	0.67	0.905028
	Target:  5'- aGCUUCAGCuuGCAcucGAgCUucaUGCGCCGGu -3' miRNA:   3'- -CGAAGUUGu-CGUa--CUgGA---GCGCGGUC- -5'
11323	5'	-53.2	NC_003084.1	+	76569	0.67	0.891475
	Target:  5'- cGCUUUAGCGGCucgaugGUGAUguuaCUUGCGCgAGu -3' miRNA:   3'- -CGAAGUUGUCG------UACUG----GAGCGCGgUC- -5'
11323	5'	-53.2	NC_003084.1	+	66563	0.67	0.891475
	Target:  5'- aGCUU-GACAGCGguaGACCUgGCcaccGCCGGu -3' miRNA:   3'- -CGAAgUUGUCGUa--CUGGAgCG----CGGUC- -5'
11323	5'	-53.2	NC_003084.1	+	71301	0.69	0.827712
	Target:  5'- ---cCAACAGCAgcgGGCucacaaacuCUCGCGCCAc -3' miRNA:   3'- cgaaGUUGUCGUa--CUG---------GAGCGCGGUc -5'
11323	5'	-53.2	NC_003084.1	+	99334	0.69	0.818779
	Target:  5'- uGC-UCAACAgguugcGCAUGACCUCGUccgagcggGCUGGg -3' miRNA:   3'- -CGaAGUUGU------CGUACUGGAGCG--------CGGUC- -5'
11323	5'	-53.2	NC_003084.1	+	33214	1.12	0.002207
	Target:  5'- gGCUUCAACAGCAUGACCUCGCGCCAGg -3' miRNA:   3'- -CGAAGUUGUCGUACUGGAGCGCGGUC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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