miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11323 5' -53.2 NC_003084.1 + 84616 0.66 0.92903
Target:  5'- uGCUUCGagaACGGCAgGACUcC-CGCCGGu -3'
miRNA:   3'- -CGAAGU---UGUCGUaCUGGaGcGCGGUC- -5'
11323 5' -53.2 NC_003084.1 + 30942 0.66 0.92903
Target:  5'- aGUUUCGGuCAcgaacGUGUGACC-CGCGCCGu -3'
miRNA:   3'- -CGAAGUU-GU-----CGUACUGGaGCGCGGUc -5'
11323 5' -53.2 NC_003084.1 + 81023 0.67 0.91142
Target:  5'- uGCUUgAGCAGCAUcuCgaUGUGCCAGu -3'
miRNA:   3'- -CGAAgUUGUCGUAcuGgaGCGCGGUC- -5'
11323 5' -53.2 NC_003084.1 + 3113 0.67 0.905028
Target:  5'- aGCUgCAccGCAGCGUGACCa-GCuuaguuuuuGCCGGg -3'
miRNA:   3'- -CGAaGU--UGUCGUACUGGagCG---------CGGUC- -5'
11323 5' -53.2 NC_003084.1 + 6040 0.67 0.905028
Target:  5'- aGCUUCAGCuuGCAcucGAgCUucaUGCGCCGGu -3'
miRNA:   3'- -CGAAGUUGu-CGUa--CUgGA---GCGCGGUC- -5'
11323 5' -53.2 NC_003084.1 + 76569 0.67 0.891475
Target:  5'- cGCUUUAGCGGCucgaugGUGAUguuaCUUGCGCgAGu -3'
miRNA:   3'- -CGAAGUUGUCG------UACUG----GAGCGCGgUC- -5'
11323 5' -53.2 NC_003084.1 + 66563 0.67 0.891475
Target:  5'- aGCUU-GACAGCGguaGACCUgGCcaccGCCGGu -3'
miRNA:   3'- -CGAAgUUGUCGUa--CUGGAgCG----CGGUC- -5'
11323 5' -53.2 NC_003084.1 + 71301 0.69 0.827712
Target:  5'- ---cCAACAGCAgcgGGCucacaaacuCUCGCGCCAc -3'
miRNA:   3'- cgaaGUUGUCGUa--CUG---------GAGCGCGGUc -5'
11323 5' -53.2 NC_003084.1 + 99334 0.69 0.818779
Target:  5'- uGC-UCAACAgguugcGCAUGACCUCGUccgagcggGCUGGg -3'
miRNA:   3'- -CGaAGUUGU------CGUACUGGAGCG--------CGGUC- -5'
11323 5' -53.2 NC_003084.1 + 33214 1.12 0.002207
Target:  5'- gGCUUCAACAGCAUGACCUCGCGCCAGg -3'
miRNA:   3'- -CGAAGUUGUCGUACUGGAGCGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.