miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11325 3' -55.7 NC_003084.1 + 6769 0.66 0.817237
Target:  5'- ---uUGGuGGCCGCCA---GUUGGcGCa -3'
miRNA:   3'- aaacACC-CCGGCGGUuuaCAACC-CGa -5'
11325 3' -55.7 NC_003084.1 + 16747 0.66 0.779592
Target:  5'- ---cUGGGGCCGCCGGAggugaaaaGUUGcuagaGGCa -3'
miRNA:   3'- aaacACCCCGGCGGUUUa-------CAAC-----CCGa -5'
11325 3' -55.7 NC_003084.1 + 49111 0.67 0.729347
Target:  5'- --cGUGGGGCCGUagu-UGgUGGuGCUa -3'
miRNA:   3'- aaaCACCCCGGCGguuuACaACC-CGA- -5'
11325 3' -55.7 NC_003084.1 + 49281 0.67 0.729347
Target:  5'- --cGUGGGGCCGUagu-UGgUGGuGCUa -3'
miRNA:   3'- aaaCACCCCGGCGguuuACaACC-CGA- -5'
11325 3' -55.7 NC_003084.1 + 49366 0.67 0.729347
Target:  5'- --cGUGGGGCCGUagu-UGgUGGuGCUa -3'
miRNA:   3'- aaaCACCCCGGCGguuuACaACC-CGA- -5'
11325 3' -55.7 NC_003084.1 + 69757 0.69 0.655408
Target:  5'- ---aUGGGGCuCGCCAug-GUcgagUGGGCa -3'
miRNA:   3'- aaacACCCCG-GCGGUuuaCA----ACCCGa -5'
11325 3' -55.7 NC_003084.1 + 38747 0.69 0.644684
Target:  5'- ----cGGGGCUGCCGAGag-UGGGUg -3'
miRNA:   3'- aaacaCCCCGGCGGUUUacaACCCGa -5'
11325 3' -55.7 NC_003084.1 + 68705 0.69 0.623211
Target:  5'- --cGUGGGGCCGUUGuuUG-UGGuGCUa -3'
miRNA:   3'- aaaCACCCCGGCGGUuuACaACC-CGA- -5'
11325 3' -55.7 NC_003084.1 + 49196 0.71 0.487195
Target:  5'- --cGUGGGGCCGUCGu-UGgUGGuGCUa -3'
miRNA:   3'- aaaCACCCCGGCGGUuuACaACC-CGA- -5'
11325 3' -55.7 NC_003084.1 + 68642 0.71 0.487195
Target:  5'- --cGUGGGGCCGUCGu-UGgUGGuGCUa -3'
miRNA:   3'- aaaCACCCCGGCGGUuuACaACC-CGA- -5'
11325 3' -55.7 NC_003084.1 + 68822 0.73 0.414322
Target:  5'- uUUUGUGGGGCCGUUGucGGUGgugcuaacacugggUGGGCa -3'
miRNA:   3'- -AAACACCCCGGCGGU--UUACa-------------ACCCGa -5'
11325 3' -55.7 NC_003084.1 + 45922 0.73 0.410674
Target:  5'- ---cUGGGGUCGUCGAAgaaGUUGGGCc -3'
miRNA:   3'- aaacACCCCGGCGGUUUa--CAACCCGa -5'
11325 3' -55.7 NC_003084.1 + 37936 0.76 0.289146
Target:  5'- uUUUGUGGGGCCcacauuugcgguGCUAAAgggGUUGGGUUu -3'
miRNA:   3'- -AAACACCCCGG------------CGGUUUa--CAACCCGA- -5'
11325 3' -55.7 NC_003084.1 + 38000 1.05 0.003012
Target:  5'- uUUUGUGGGGCCGCCAAAUGUUGGGCUc -3'
miRNA:   3'- -AAACACCCCGGCGGUUUACAACCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.