miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11328 3' -53.8 NC_003084.1 + 23507 0.66 0.919467
Target:  5'- --cGCaCGUACaggUGGCACC-GCUGGUg -3'
miRNA:   3'- cuuCGcGCAUGg--AUCGUGGaUGACCG- -5'
11328 3' -53.8 NC_003084.1 + 74775 0.66 0.919467
Target:  5'- uGAGGaacgaGCGgGCCgcccGCACCUuccGCUGGUu -3'
miRNA:   3'- -CUUCg----CGCaUGGau--CGUGGA---UGACCG- -5'
11328 3' -53.8 NC_003084.1 + 67239 0.66 0.919467
Target:  5'- uGAGCGaGUucg-AGCGCCaACUGGCg -3'
miRNA:   3'- cUUCGCgCAuggaUCGUGGaUGACCG- -5'
11328 3' -53.8 NC_003084.1 + 77812 0.66 0.907129
Target:  5'- --uGCGCGUuaccguaggACCaUAGCACC-ACaaugUGGCg -3'
miRNA:   3'- cuuCGCGCA---------UGG-AUCGUGGaUG----ACCG- -5'
11328 3' -53.8 NC_003084.1 + 46454 0.66 0.896516
Target:  5'- -uAGCGCGUACCaguUGGUgcgcgaauacagcucGCCaACUGGg -3'
miRNA:   3'- cuUCGCGCAUGG---AUCG---------------UGGaUGACCg -5'
11328 3' -53.8 NC_003084.1 + 7389 0.67 0.886698
Target:  5'- cGGAGCGaCGa--CUGGUG-CUGCUGGCa -3'
miRNA:   3'- -CUUCGC-GCaugGAUCGUgGAUGACCG- -5'
11328 3' -53.8 NC_003084.1 + 69990 0.68 0.84529
Target:  5'- --uGCGCGUACUUuugcaggAGCGCCgcuucguccacCUGGCc -3'
miRNA:   3'- cuuCGCGCAUGGA-------UCGUGGau---------GACCG- -5'
11328 3' -53.8 NC_003084.1 + 10484 0.68 0.821839
Target:  5'- uGGAGCGUGUugGCCUGGUccacACCgcgGCUcaGGUg -3'
miRNA:   3'- -CUUCGCGCA--UGGAUCG----UGGa--UGA--CCG- -5'
11328 3' -53.8 NC_003084.1 + 25011 0.68 0.803571
Target:  5'- aGggGCGUGcacgACCUGGCgugcucuuGgCUugUGGCc -3'
miRNA:   3'- -CuuCGCGCa---UGGAUCG--------UgGAugACCG- -5'
11328 3' -53.8 NC_003084.1 + 1261 0.68 0.803571
Target:  5'- uGAAGCcaaGC-UACCUGGaCACCUcggccgACUGGUg -3'
miRNA:   3'- -CUUCG---CGcAUGGAUC-GUGGA------UGACCG- -5'
11328 3' -53.8 NC_003084.1 + 20690 0.69 0.794176
Target:  5'- uGGAGUuuGCGUGCCguuGCGCUugcaUGCUGaGCg -3'
miRNA:   3'- -CUUCG--CGCAUGGau-CGUGG----AUGAC-CG- -5'
11328 3' -53.8 NC_003084.1 + 94294 0.69 0.766063
Target:  5'- uGAGCGCGUAugcauCgUAGCACCggaggguugugugccACUGGUg -3'
miRNA:   3'- cUUCGCGCAU-----GgAUCGUGGa--------------UGACCG- -5'
11328 3' -53.8 NC_003084.1 + 105793 0.71 0.682543
Target:  5'- aGAAGUGCccaagcUACCUGGaCACCUcggccgACUGGUg -3'
miRNA:   3'- -CUUCGCGc-----AUGGAUC-GUGGA------UGACCG- -5'
11328 3' -53.8 NC_003084.1 + 41030 1.12 0.001683
Target:  5'- uGAAGCGCGUACCUAGCACCUACUGGCg -3'
miRNA:   3'- -CUUCGCGCAUGGAUCGUGGAUGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.