miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11328 5' -49.2 NC_003084.1 + 60615 0.66 0.995153
Target:  5'- aCCuCCUGUugcGCGAuuUGGACGCccGUGAc -3'
miRNA:   3'- -GGuGGAUAuauUGCU--ACCUGCG--CGCU- -5'
11328 5' -49.2 NC_003084.1 + 70478 0.66 0.995153
Target:  5'- gCACCUAUAgcaacuCGAUGGuACcgGCGCuGAu -3'
miRNA:   3'- gGUGGAUAUauu---GCUACC-UG--CGCG-CU- -5'
11328 5' -49.2 NC_003084.1 + 55219 0.67 0.992392
Target:  5'- aCCACCg----GGCGGUGGAC-UGCa- -3'
miRNA:   3'- -GGUGGauauaUUGCUACCUGcGCGcu -5'
11328 5' -49.2 NC_003084.1 + 71462 0.67 0.992392
Target:  5'- aCACCgaugGUGACacUGGAUgugGCGCGAg -3'
miRNA:   3'- gGUGGaua-UAUUGcuACCUG---CGCGCU- -5'
11328 5' -49.2 NC_003084.1 + 103631 0.68 0.986912
Target:  5'- aCCGCCgugagcauUGUAACGAUGaGCaGgGCGAu -3'
miRNA:   3'- -GGUGGau------AUAUUGCUACcUG-CgCGCU- -5'
11328 5' -49.2 NC_003084.1 + 16065 0.68 0.983226
Target:  5'- uUCACCc--GUAACGGUGGugGUgaagGUGAa -3'
miRNA:   3'- -GGUGGauaUAUUGCUACCugCG----CGCU- -5'
11328 5' -49.2 NC_003084.1 + 64529 0.68 0.983226
Target:  5'- gCUACCUAacgGUGGaccugcccagcuCGAUGGAauuuUGCGCGAa -3'
miRNA:   3'- -GGUGGAUa--UAUU------------GCUACCU----GCGCGCU- -5'
11328 5' -49.2 NC_003084.1 + 1424 0.69 0.976294
Target:  5'- cCCACgCUAg--AGUGGUGGACGCGUu- -3'
miRNA:   3'- -GGUG-GAUauaUUGCUACCUGCGCGcu -5'
11328 5' -49.2 NC_003084.1 + 40186 0.69 0.976294
Target:  5'- cUCACUc---UAGCGAcUGGACGCGCa- -3'
miRNA:   3'- -GGUGGauauAUUGCU-ACCUGCGCGcu -5'
11328 5' -49.2 NC_003084.1 + 18486 0.73 0.839366
Target:  5'- aCCGCCaagcUGUAucUAGCGGUGGACGUaaacguagucgaucGCGAu -3'
miRNA:   3'- -GGUGG----AUAU--AUUGCUACCUGCG--------------CGCU- -5'
11328 5' -49.2 NC_003084.1 + 90263 0.75 0.786878
Target:  5'- cCCACCagcgGUGUAACGGUGGAC-C-CGAa -3'
miRNA:   3'- -GGUGGa---UAUAUUGCUACCUGcGcGCU- -5'
11328 5' -49.2 NC_003084.1 + 40995 1.13 0.006418
Target:  5'- aCCACCUAUAUAACGAUGGACGCGCGAu -3'
miRNA:   3'- -GGUGGAUAUAUUGCUACCUGCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.