miRNA display CGI


Results 1 - 3 of 3 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1133 5' -60.7 NC_000942.1 + 7895 0.66 0.279494
Target:  5'- --aCUCCCGCCCgaggacgucccCGAAagaagGCGACUGUa -3'
miRNA:   3'- ucgGGGGGCGGGa----------GCUUa----CGCUGACG- -5'
1133 5' -60.7 NC_000942.1 + 14411 0.66 0.278784
Target:  5'- gAGCaggaaucaaCCCCGUuccugcgUCUCGGucaacaaccagaGUGCGACUGCc -3'
miRNA:   3'- -UCGg--------GGGGCG-------GGAGCU------------UACGCUGACG- -5'
1133 5' -60.7 NC_000942.1 + 23394 1.1 0.000112
Target:  5'- gAGCCCCCCGCCCUCGAAUGCGACUGCc -3'
miRNA:   3'- -UCGGGGGGCGGGAGCUUACGCUGACG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.