miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11330 3' -51.6 NC_003084.1 + 4830 0.66 0.968993
Target:  5'- ---aUUGGCCCCAGcuuGAGCGCGc--- -3'
miRNA:   3'- gucaAGCCGGGGUUc--UUCGCGUuuug -5'
11330 3' -51.6 NC_003084.1 + 84113 0.66 0.968993
Target:  5'- -cGUUCgaGGCCUCgAAGggGCGCuuuGAGa -3'
miRNA:   3'- guCAAG--CCGGGG-UUCuuCGCGu--UUUg -5'
11330 3' -51.6 NC_003084.1 + 12559 0.66 0.965677
Target:  5'- aCAGcgCGGCCa--AGGAGUGCGAGc- -3'
miRNA:   3'- -GUCaaGCCGGgguUCUUCGCGUUUug -5'
11330 3' -51.6 NC_003084.1 + 70288 0.66 0.965677
Target:  5'- cCGGUg-GGCCCCGAcaugguGAccauGGUGCGAGAUa -3'
miRNA:   3'- -GUCAagCCGGGGUU------CU----UCGCGUUUUG- -5'
11330 3' -51.6 NC_003084.1 + 40686 0.66 0.965677
Target:  5'- uGGUcUGGCCCCucauacAGCGCAcGAACu -3'
miRNA:   3'- gUCAaGCCGGGGuucu--UCGCGU-UUUG- -5'
11330 3' -51.6 NC_003084.1 + 9721 0.66 0.958314
Target:  5'- uCGGUggUGGCCCCGAG-GGCGacuauGCu -3'
miRNA:   3'- -GUCAa-GCCGGGGUUCuUCGCguuu-UG- -5'
11330 3' -51.6 NC_003084.1 + 101035 0.66 0.954253
Target:  5'- cCGGUggGGCUCUuGGggGCGCuc-GCa -3'
miRNA:   3'- -GUCAagCCGGGGuUCuuCGCGuuuUG- -5'
11330 3' -51.6 NC_003084.1 + 99987 0.67 0.949934
Target:  5'- gCGGUUCGGUCaguGGGAGCaGCGGuAACa -3'
miRNA:   3'- -GUCAAGCCGGgguUCUUCG-CGUU-UUG- -5'
11330 3' -51.6 NC_003084.1 + 57454 0.67 0.949934
Target:  5'- aAGUUgGGCUCCuucucGGGCGCAAGGu -3'
miRNA:   3'- gUCAAgCCGGGGuuc--UUCGCGUUUUg -5'
11330 3' -51.6 NC_003084.1 + 986 0.67 0.940502
Target:  5'- --aUUUGGCCgUgGAGAAGUGCGAGAa -3'
miRNA:   3'- gucAAGCCGG-GgUUCUUCGCGUUUUg -5'
11330 3' -51.6 NC_003084.1 + 101391 0.67 0.940002
Target:  5'- uGGUcauUUGGCCCCAcGAacuggccaccaguAGCGaCAAAACc -3'
miRNA:   3'- gUCA---AGCCGGGGUuCU-------------UCGC-GUUUUG- -5'
11330 3' -51.6 NC_003084.1 + 38913 0.67 0.935383
Target:  5'- --uUUCGaGaagCCCGAGGAGCGCAAAu- -3'
miRNA:   3'- gucAAGC-Cg--GGGUUCUUCGCGUUUug -5'
11330 3' -51.6 NC_003084.1 + 21273 0.68 0.918395
Target:  5'- gGGUacUCGGCCCCGuc--GCGUAuAACu -3'
miRNA:   3'- gUCA--AGCCGGGGUucuuCGCGUuUUG- -5'
11330 3' -51.6 NC_003084.1 + 91973 0.68 0.905714
Target:  5'- cCGGUUaGGUCCCAAGuuGUGCAc--- -3'
miRNA:   3'- -GUCAAgCCGGGGUUCuuCGCGUuuug -5'
11330 3' -51.6 NC_003084.1 + 26790 0.69 0.884699
Target:  5'- aAG-UCGGCCCCGAuGAGGCaCAAc-- -3'
miRNA:   3'- gUCaAGCCGGGGUU-CUUCGcGUUuug -5'
11330 3' -51.6 NC_003084.1 + 87416 0.69 0.884699
Target:  5'- gCGGUacuuUUGGCCUCAucGAGCGCAAAc- -3'
miRNA:   3'- -GUCA----AGCCGGGGUucUUCGCGUUUug -5'
11330 3' -51.6 NC_003084.1 + 100600 0.69 0.861398
Target:  5'- ----cCGGCCuCCAuc-AGCGCAGAGCg -3'
miRNA:   3'- gucaaGCCGG-GGUucuUCGCGUUUUG- -5'
11330 3' -51.6 NC_003084.1 + 34384 0.7 0.827074
Target:  5'- gCGGUuuaUCGaacgcuaguGCCUCAAGggGCGCAAAc- -3'
miRNA:   3'- -GUCA---AGC---------CGGGGUUCuuCGCGUUUug -5'
11330 3' -51.6 NC_003084.1 + 94245 0.71 0.769747
Target:  5'- gCAGUU-GGCCCCAcaAGcAGCGCAucGAAUc -3'
miRNA:   3'- -GUCAAgCCGGGGU--UCuUCGCGU--UUUG- -5'
11330 3' -51.6 NC_003084.1 + 42269 1.11 0.003437
Target:  5'- cCAGUUCGGCCCCAAGAAGCGCAAAACg -3'
miRNA:   3'- -GUCAAGCCGGGGUUCUUCGCGUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.