miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11330 5' -55.8 NC_003084.1 + 9638 0.65 0.849604
Target:  5'- --cCGACAuUGCCacgggacccgugggUGaACCUGGGGCCa- -3'
miRNA:   3'- uuuGCUGU-ACGG--------------AC-UGGACCUCGGcg -5'
11330 5' -55.8 NC_003084.1 + 62103 0.67 0.780752
Target:  5'- uGACGAUAUGCUaGA--UGGGGCCGa -3'
miRNA:   3'- uUUGCUGUACGGaCUggACCUCGGCg -5'
11330 5' -55.8 NC_003084.1 + 42321 0.67 0.761307
Target:  5'- --uUGAUGU-CCUcGACCUGGAGcCCGUa -3'
miRNA:   3'- uuuGCUGUAcGGA-CUGGACCUC-GGCG- -5'
11330 5' -55.8 NC_003084.1 + 96160 0.67 0.751395
Target:  5'- cAACGAaAUGUCUcGCCUGGuGCgGCu -3'
miRNA:   3'- uUUGCUgUACGGAcUGGACCuCGgCG- -5'
11330 5' -55.8 NC_003084.1 + 84227 0.68 0.74137
Target:  5'- aGggUGACAU-UCUGACaCUGGAGUaCGCg -3'
miRNA:   3'- -UuuGCUGUAcGGACUG-GACCUCG-GCG- -5'
11330 5' -55.8 NC_003084.1 + 39828 0.68 0.721025
Target:  5'- gGGACGACcauuUGCCgGACCUguccccauugaaGGAGCgCGUu -3'
miRNA:   3'- -UUUGCUGu---ACGGaCUGGA------------CCUCG-GCG- -5'
11330 5' -55.8 NC_003084.1 + 29788 0.68 0.710725
Target:  5'- cAAGCGGCAgugGCCUacGGCgcaaUGGAGCCa- -3'
miRNA:   3'- -UUUGCUGUa--CGGA--CUGg---ACCUCGGcg -5'
11330 5' -55.8 NC_003084.1 + 70956 0.7 0.615978
Target:  5'- gAAGCGAUGUGCaCUgGACCUcgaGGAGgUGCg -3'
miRNA:   3'- -UUUGCUGUACG-GA-CUGGA---CCUCgGCG- -5'
11330 5' -55.8 NC_003084.1 + 57633 0.7 0.615978
Target:  5'- uGACGAUGUuguuggGCCgGGCCUGGAaGCgGCa -3'
miRNA:   3'- uUUGCUGUA------CGGaCUGGACCU-CGgCG- -5'
11330 5' -55.8 NC_003084.1 + 45856 0.7 0.605397
Target:  5'- -uGCGGCuuggGCUgGACCcGGGGCUGCa -3'
miRNA:   3'- uuUGCUGua--CGGaCUGGaCCUCGGCG- -5'
11330 5' -55.8 NC_003084.1 + 43998 0.7 0.584307
Target:  5'- -cACGGCAauuacagccUGUuugCUGACaUUGGAGCCGCg -3'
miRNA:   3'- uuUGCUGU---------ACG---GACUG-GACCUCGGCG- -5'
11330 5' -55.8 NC_003084.1 + 66085 0.75 0.33967
Target:  5'- cGACGACGUGCCgGGCUucaacgUGGAGCC-Ca -3'
miRNA:   3'- uUUGCUGUACGGaCUGG------ACCUCGGcG- -5'
11330 5' -55.8 NC_003084.1 + 42232 1.1 0.001506
Target:  5'- aAAACGACAUGCCUGACCUGGAGCCGCa -3'
miRNA:   3'- -UUUGCUGUACGGACUGGACCUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.