Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11331 | 3' | -54.3 | NC_003084.1 | + | 20684 | 0.66 | 0.915974 |
Target: 5'- -gGGCGCUGGAGuuuGcGUGCCGUuGCGCu- -3' miRNA: 3'- ugUCGCGGCUUU---C-CAUGGCA-UGCGuc -5' |
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11331 | 3' | -54.3 | NC_003084.1 | + | 80760 | 0.66 | 0.903475 |
Target: 5'- -gGGgGCCGAGcacuGGUACCGcUugGUAa -3' miRNA: 3'- ugUCgCGGCUUu---CCAUGGC-AugCGUc -5' |
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11331 | 3' | -54.3 | NC_003084.1 | + | 94843 | 0.66 | 0.896848 |
Target: 5'- gGCGGCcgGCCGcAAAGGUucGCCaauGUGCGCc- -3' miRNA: 3'- -UGUCG--CGGC-UUUCCA--UGG---CAUGCGuc -5' |
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11331 | 3' | -54.3 | NC_003084.1 | + | 53979 | 0.67 | 0.882856 |
Target: 5'- -aAGuCGCCGugaucAAAGGgcCCGUgaACGCAGa -3' miRNA: 3'- ugUC-GCGGC-----UUUCCauGGCA--UGCGUC- -5' |
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11331 | 3' | -54.3 | NC_003084.1 | + | 81707 | 0.67 | 0.882132 |
Target: 5'- uGCAGCGCCGAAuguugcucaguguGGGUAgUucACGCu- -3' miRNA: 3'- -UGUCGCGGCUU-------------UCCAUgGcaUGCGuc -5' |
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11331 | 3' | -54.3 | NC_003084.1 | + | 64429 | 0.67 | 0.875501 |
Target: 5'- --cGCGCUGGAugugACCGUACGCGc -3' miRNA: 3'- uguCGCGGCUUuccaUGGCAUGCGUc -5' |
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11331 | 3' | -54.3 | NC_003084.1 | + | 40893 | 0.69 | 0.790265 |
Target: 5'- -uGGCGCCaguAGGUGCUagGUACGCGu -3' miRNA: 3'- ugUCGCGGcuuUCCAUGG--CAUGCGUc -5' |
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11331 | 3' | -54.3 | NC_003084.1 | + | 10375 | 0.69 | 0.780752 |
Target: 5'- cCAGCugGCCGAGGGGUGCUuggaGCAGc -3' miRNA: 3'- uGUCG--CGGCUUUCCAUGGcaugCGUC- -5' |
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11331 | 3' | -54.3 | NC_003084.1 | + | 85132 | 0.69 | 0.780752 |
Target: 5'- uGCAGacgcuCGCCGAGGGGUGCuucgCGU-UGCAGa -3' miRNA: 3'- -UGUC-----GCGGCUUUCCAUG----GCAuGCGUC- -5' |
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11331 | 3' | -54.3 | NC_003084.1 | + | 89480 | 0.69 | 0.751395 |
Target: 5'- --uGCGCUGGAcgaGGGUGCCGUaaagGCGUAc -3' miRNA: 3'- uguCGCGGCUU---UCCAUGGCA----UGCGUc -5' |
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11331 | 3' | -54.3 | NC_003084.1 | + | 64782 | 0.71 | 0.637172 |
Target: 5'- uAUAGCGCCGaAGAGGgccACCGUGagguugUGCGGc -3' miRNA: 3'- -UGUCGCGGC-UUUCCa--UGGCAU------GCGUC- -5' |
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11331 | 3' | -54.3 | NC_003084.1 | + | 32063 | 0.73 | 0.551929 |
Target: 5'- gUAGCGCCGGGucGGGcaagcgauccaagUGCCGUcuguGCGCAGg -3' miRNA: 3'- uGUCGCGGCUU--UCC-------------AUGGCA----UGCGUC- -5' |
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11331 | 3' | -54.3 | NC_003084.1 | + | 44080 | 1.08 | 0.00337 |
Target: 5'- gACAGCGCCGAAAGGUACCGUACGCAGc -3' miRNA: 3'- -UGUCGCGGCUUUCCAUGGCAUGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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