miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11332 3' -55.5 NC_003084.1 + 173 0.66 0.853771
Target:  5'- ---gGCCUGCAugGgacuauaauccccgUUCGAGCgggGCUGCa -3'
miRNA:   3'- ccaaCGGACGUugU--------------GAGCUCG---CGGCG- -5'
11332 3' -55.5 NC_003084.1 + 1045 0.68 0.786411
Target:  5'- --cUGCUUGUAGCGCUUG-GCGuuGg -3'
miRNA:   3'- ccaACGGACGUUGUGAGCuCGCggCg -5'
11332 3' -55.5 NC_003084.1 + 3575 0.66 0.856166
Target:  5'- ----aCCUaGCuGCACUgGuGCGCCGCu -3'
miRNA:   3'- ccaacGGA-CGuUGUGAgCuCGCGGCG- -5'
11332 3' -55.5 NC_003084.1 + 6251 0.71 0.603122
Target:  5'- uGG-UGCCaauuUGCAGCucacCUCGGGCacggGCCGCu -3'
miRNA:   3'- -CCaACGG----ACGUUGu---GAGCUCG----CGGCG- -5'
11332 3' -55.5 NC_003084.1 + 13502 0.69 0.737799
Target:  5'- -uUUGUCgGUGA-GCUCGAGgGCCGCa -3'
miRNA:   3'- ccAACGGaCGUUgUGAGCUCgCGGCG- -5'
11332 3' -55.5 NC_003084.1 + 18505 0.67 0.82274
Target:  5'- aGUUGuUCUGCgAACcCUCGGGCGCUuCa -3'
miRNA:   3'- cCAAC-GGACG-UUGuGAGCUCGCGGcG- -5'
11332 3' -55.5 NC_003084.1 + 27212 0.7 0.665962
Target:  5'- gGGUUGUUUGUGACAC-CGGGCuucaCUGCg -3'
miRNA:   3'- -CCAACGGACGUUGUGaGCUCGc---GGCG- -5'
11332 3' -55.5 NC_003084.1 + 27683 0.68 0.757603
Target:  5'- cGGgUGCCgaugaUGUAGCGCUC-AGaGCCGCu -3'
miRNA:   3'- -CCaACGG-----ACGUUGUGAGcUCgCGGCG- -5'
11332 3' -55.5 NC_003084.1 + 31959 0.68 0.776941
Target:  5'- aGUUGCCggacucgguugGCAcCACcgCGGGCucgGCCGCa -3'
miRNA:   3'- cCAACGGa----------CGUuGUGa-GCUCG---CGGCG- -5'
11332 3' -55.5 NC_003084.1 + 38318 0.66 0.864009
Target:  5'- ---gGCUUGCAaucgauuccgcaGCAgUCG-GCGUCGCa -3'
miRNA:   3'- ccaaCGGACGU------------UGUgAGCuCGCGGCG- -5'
11332 3' -55.5 NC_003084.1 + 38468 0.69 0.686773
Target:  5'- aGGUUGuUUUGCGACGC-CGAcUGCUGCg -3'
miRNA:   3'- -CCAAC-GGACGUUGUGaGCUcGCGGCG- -5'
11332 3' -55.5 NC_003084.1 + 42689 0.7 0.634552
Target:  5'- gGGUgcGCCUGacgGACA-UCGAGCGgCGCg -3'
miRNA:   3'- -CCAa-CGGACg--UUGUgAGCUCGCgGCG- -5'
11332 3' -55.5 NC_003084.1 + 42838 0.66 0.864009
Target:  5'- ---cGCCaUGUcuCACUCGAGCGa-GCa -3'
miRNA:   3'- ccaaCGG-ACGuuGUGAGCUCGCggCG- -5'
11332 3' -55.5 NC_003084.1 + 43113 0.68 0.747755
Target:  5'- uGGUUaGCCUuuaCGAucCACUCGAgcaaGCGCUGCg -3'
miRNA:   3'- -CCAA-CGGAc--GUU--GUGAGCU----CGCGGCG- -5'
11332 3' -55.5 NC_003084.1 + 43328 0.68 0.747755
Target:  5'- cGUUGCCcGCAuauuuACcCUCGAGgGCCa- -3'
miRNA:   3'- cCAACGGaCGU-----UGuGAGCUCgCGGcg -5'
11332 3' -55.5 NC_003084.1 + 44030 0.75 0.370157
Target:  5'- ---aGCCgcgcuggucaucaaUGCGGCGCUCGAGUGuuGCa -3'
miRNA:   3'- ccaaCGG--------------ACGUUGUGAGCUCGCggCG- -5'
11332 3' -55.5 NC_003084.1 + 44183 0.95 0.020067
Target:  5'- gGGUU-CCgUGCAACACUCGAGCGCCGCa -3'
miRNA:   3'- -CCAAcGG-ACGUUGUGAGCUCGCGGCG- -5'
11332 3' -55.5 NC_003084.1 + 44742 0.69 0.727748
Target:  5'- aGGUUGUaucgCUGCAcaaAUUCGAGUaCCGCg -3'
miRNA:   3'- -CCAACG----GACGUug-UGAGCUCGcGGCG- -5'
11332 3' -55.5 NC_003084.1 + 46749 0.69 0.727748
Target:  5'- --gUGCCcGCAcguaaACACUCGAGCaauuacgugguGCUGCc -3'
miRNA:   3'- ccaACGGaCGU-----UGUGAGCUCG-----------CGGCG- -5'
11332 3' -55.5 NC_003084.1 + 47020 0.66 0.864009
Target:  5'- cGUUGCagugGCAucgcaagguGCACUUGAGCGgUGUu -3'
miRNA:   3'- cCAACGga--CGU---------UGUGAGCUCGCgGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.