miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11332 3' -55.5 NC_003084.1 + 56223 0.68 0.747755
Target:  5'- ---aGCC-GCucguC-CUUGAGCGCCGCa -3'
miRNA:   3'- ccaaCGGaCGuu--GuGAGCUCGCGGCG- -5'
11332 3' -55.5 NC_003084.1 + 43113 0.68 0.747755
Target:  5'- uGGUUaGCCUuuaCGAucCACUCGAgcaaGCGCUGCg -3'
miRNA:   3'- -CCAA-CGGAc--GUU--GUGAGCU----CGCGGCG- -5'
11332 3' -55.5 NC_003084.1 + 43328 0.68 0.747755
Target:  5'- cGUUGCCcGCAuauuuACcCUCGAGgGCCa- -3'
miRNA:   3'- cCAACGGaCGU-----UGuGAGCUCgCGGcg -5'
11332 3' -55.5 NC_003084.1 + 78560 0.69 0.737799
Target:  5'- --gUGUCUGCAGCAUgUCGAacgauacCGCCGCc -3'
miRNA:   3'- ccaACGGACGUUGUG-AGCUc------GCGGCG- -5'
11332 3' -55.5 NC_003084.1 + 13502 0.69 0.737799
Target:  5'- -uUUGUCgGUGA-GCUCGAGgGCCGCa -3'
miRNA:   3'- ccAACGGaCGUUgUGAGCUCgCGGCG- -5'
11332 3' -55.5 NC_003084.1 + 44742 0.69 0.727748
Target:  5'- aGGUUGUaucgCUGCAcaaAUUCGAGUaCCGCg -3'
miRNA:   3'- -CCAACG----GACGUug-UGAGCUCGcGGCG- -5'
11332 3' -55.5 NC_003084.1 + 46749 0.69 0.727748
Target:  5'- --gUGCCcGCAcguaaACACUCGAGCaauuacgugguGCUGCc -3'
miRNA:   3'- ccaACGGaCGU-----UGUGAGCUCG-----------CGGCG- -5'
11332 3' -55.5 NC_003084.1 + 38468 0.69 0.686773
Target:  5'- aGGUUGuUUUGCGACGC-CGAcUGCUGCg -3'
miRNA:   3'- -CCAAC-GGACGUUGUGaGCUcGCGGCG- -5'
11332 3' -55.5 NC_003084.1 + 27212 0.7 0.665962
Target:  5'- gGGUUGUUUGUGACAC-CGGGCuucaCUGCg -3'
miRNA:   3'- -CCAACGGACGUUGUGaGCUCGc---GGCG- -5'
11332 3' -55.5 NC_003084.1 + 42689 0.7 0.634552
Target:  5'- gGGUgcGCCUGacgGACA-UCGAGCGgCGCg -3'
miRNA:   3'- -CCAa-CGGACg--UUGUgAGCUCGCgGCG- -5'
11332 3' -55.5 NC_003084.1 + 6251 0.71 0.603122
Target:  5'- uGG-UGCCaauuUGCAGCucacCUCGGGCacggGCCGCu -3'
miRNA:   3'- -CCaACGG----ACGUUGu---GAGCUCG----CGGCG- -5'
11332 3' -55.5 NC_003084.1 + 102565 0.71 0.571894
Target:  5'- cGGacagUGgCUGCAGCAUgaGGGCGCCGg -3'
miRNA:   3'- -CCa---ACgGACGUUGUGagCUCGCGGCg -5'
11332 3' -55.5 NC_003084.1 + 62844 0.74 0.452621
Target:  5'- ---aGaCUUGCAAUACuuuuUCGAGCGCCGUg -3'
miRNA:   3'- ccaaC-GGACGUUGUG----AGCUCGCGGCG- -5'
11332 3' -55.5 NC_003084.1 + 44030 0.75 0.370157
Target:  5'- ---aGCCgcgcuggucaucaaUGCGGCGCUCGAGUGuuGCa -3'
miRNA:   3'- ccaaCGG--------------ACGUUGUGAGCUCGCggCG- -5'
11332 3' -55.5 NC_003084.1 + 44183 0.95 0.020067
Target:  5'- gGGUU-CCgUGCAACACUCGAGCGCCGCa -3'
miRNA:   3'- -CCAAcGG-ACGUUGUGAGCUCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.