miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11332 5' -53 NC_003084.1 + 23117 0.66 0.932128
Target:  5'- aAGgGCGGCgucaagacguacCCGAUGUUGGCGcucAACAa -3'
miRNA:   3'- gUCgCGCCGa-----------GGUUACAGUCGU---UUGU- -5'
11332 5' -53 NC_003084.1 + 47505 0.66 0.927738
Target:  5'- uGGCGCugcacuuuGGUUCCcGUGUCAGU--GCGg -3'
miRNA:   3'- gUCGCG--------CCGAGGuUACAGUCGuuUGU- -5'
11332 5' -53 NC_003084.1 + 23613 0.67 0.89643
Target:  5'- uCAGCGuCGaGCUCUccaauuGUGUgGGCAGGCu -3'
miRNA:   3'- -GUCGC-GC-CGAGGu-----UACAgUCGUUUGu -5'
11332 5' -53 NC_003084.1 + 41192 0.67 0.89643
Target:  5'- aCAGCGCGGUcuaacgcuUCCAGucucUGUUcGCAGugAa -3'
miRNA:   3'- -GUCGCGCCG--------AGGUU----ACAGuCGUUugU- -5'
11332 5' -53 NC_003084.1 + 2252 0.67 0.89643
Target:  5'- cUAGcCGCacaGCUCCAAUGUUGuGCGGGCGg -3'
miRNA:   3'- -GUC-GCGc--CGAGGUUACAGU-CGUUUGU- -5'
11332 5' -53 NC_003084.1 + 61288 0.67 0.882078
Target:  5'- uCAGCuGCGGCagcaCGAUGaUCAGCGuauGCAu -3'
miRNA:   3'- -GUCG-CGCCGag--GUUAC-AGUCGUu--UGU- -5'
11332 5' -53 NC_003084.1 + 79752 0.68 0.850437
Target:  5'- uUAGCGUccgGGCUgCCGuuguUGUCAGCGGAa- -3'
miRNA:   3'- -GUCGCG---CCGA-GGUu---ACAGUCGUUUgu -5'
11332 5' -53 NC_003084.1 + 27257 0.69 0.815254
Target:  5'- gCGGUGCGGUacgCCGAUGUUAGaaauuuAACAa -3'
miRNA:   3'- -GUCGCGCCGa--GGUUACAGUCgu----UUGU- -5'
11332 5' -53 NC_003084.1 + 53517 0.7 0.781025
Target:  5'- gCAGCGCGGCuUCCAAaccuccaccaucgcGUCacgggccugGGCAAACAc -3'
miRNA:   3'- -GUCGCGCCG-AGGUUa-------------CAG---------UCGUUUGU- -5'
11332 5' -53 NC_003084.1 + 13926 0.71 0.683786
Target:  5'- uUAGCGCGGCaaguguUgCGAUGUCGGCcuGAGCc -3'
miRNA:   3'- -GUCGCGCCG------AgGUUACAGUCG--UUUGu -5'
11332 5' -53 NC_003084.1 + 42094 0.74 0.512528
Target:  5'- aAGUGCGGCUCCAG-GUCAGgCAu--- -3'
miRNA:   3'- gUCGCGCCGAGGUUaCAGUC-GUuugu -5'
11332 5' -53 NC_003084.1 + 44148 1.09 0.003169
Target:  5'- cCAGCGCGGCUCCAAUGUCAGCAAACAg -3'
miRNA:   3'- -GUCGCGCCGAGGUUACAGUCGUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.