miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11334 3' -57.5 NC_003084.1 + 6903 0.7 0.536699
Target:  5'- aUGGaCugCGCCAACUgGCGGCCaCCAagGAg -3'
miRNA:   3'- -AUC-GugGUGGUUGA-UGCCGG-GGUg-CU- -5'
11334 3' -57.5 NC_003084.1 + 82188 0.69 0.54687
Target:  5'- uUAGCACCGCCAA--ACGGUucUCCAcCGAc -3'
miRNA:   3'- -AUCGUGGUGGUUgaUGCCG--GGGU-GCU- -5'
11334 3' -57.5 NC_003084.1 + 97748 0.69 0.577721
Target:  5'- -cGCACCGcggauaacgguCCAACgu-GGCCUCACGAa -3'
miRNA:   3'- auCGUGGU-----------GGUUGaugCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 37996 0.69 0.598503
Target:  5'- gUGGgGCCGCCAAaugUugGGCUCCAUa- -3'
miRNA:   3'- -AUCgUGGUGGUUg--AugCCGGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 93838 0.69 0.557102
Target:  5'- aUAGUGCCGCuCAACUugACGGCCaCCuccuccggACGAa -3'
miRNA:   3'- -AUCGUGGUG-GUUGA--UGCCGG-GG--------UGCU- -5'
11334 3' -57.5 NC_003084.1 + 77665 0.69 0.557102
Target:  5'- ---aACCGCCAcauugugguGCUAUGGUCCUACGGu -3'
miRNA:   3'- aucgUGGUGGU---------UGAUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 88717 0.69 0.571516
Target:  5'- cUGGUGCCGCUgaagcccaucaagauGACUAUGGCCUCguACGAu -3'
miRNA:   3'- -AUCGUGGUGG---------------UUGAUGCCGGGG--UGCU- -5'
11334 3' -57.5 NC_003084.1 + 64323 0.69 0.59746
Target:  5'- cAGUugCucacguccacgaaGCCGugUACGGCCaCCACGu -3'
miRNA:   3'- aUCGugG-------------UGGUugAUGCCGG-GGUGCu -5'
11334 3' -57.5 NC_003084.1 + 85267 0.69 0.598503
Target:  5'- -uGCAUCAUCAcACUGCGaagcGCCUCACGGg -3'
miRNA:   3'- auCGUGGUGGU-UGAUGC----CGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 91843 0.68 0.650769
Target:  5'- -uGCugCugCuGCUGCGGCUgCAUGGu -3'
miRNA:   3'- auCGugGugGuUGAUGCCGGgGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 36197 0.68 0.629849
Target:  5'- -cGCACCGCCAACU--GGUggUCCACGu -3'
miRNA:   3'- auCGUGGUGGUUGAugCCG--GGGUGCu -5'
11334 3' -57.5 NC_003084.1 + 49668 0.68 0.619388
Target:  5'- uUGGCACCACCAccccagcucaccGgUACGGCUCaCAUa- -3'
miRNA:   3'- -AUCGUGGUGGU------------UgAUGCCGGG-GUGcu -5'
11334 3' -57.5 NC_003084.1 + 68301 0.68 0.650769
Target:  5'- -uGCACCACCAAC--CGGuUCCCAUa- -3'
miRNA:   3'- auCGUGGUGGUUGauGCC-GGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 86977 0.68 0.619388
Target:  5'- gAGCACCAUCGG-UugGGCCgCCAgUGAu -3'
miRNA:   3'- aUCGUGGUGGUUgAugCCGG-GGU-GCU- -5'
11334 3' -57.5 NC_003084.1 + 105487 0.68 0.629849
Target:  5'- -uGuCACCGCaCGACUugGGCUCCAa-- -3'
miRNA:   3'- auC-GUGGUG-GUUGAugCCGGGGUgcu -5'
11334 3' -57.5 NC_003084.1 + 74311 0.67 0.702638
Target:  5'- cGGCAUCACCAguucACUGuagcgcUGGCgCCACGu -3'
miRNA:   3'- aUCGUGGUGGU----UGAU------GCCGgGGUGCu -5'
11334 3' -57.5 NC_003084.1 + 44165 0.67 0.68201
Target:  5'- gAGCGCCgcauugaugACCAGC-GCGGCUCCAa-- -3'
miRNA:   3'- aUCGUGG---------UGGUUGaUGCCGGGGUgcu -5'
11334 3' -57.5 NC_003084.1 + 48197 0.67 0.69235
Target:  5'- gUAGCACCACUccucgACGcacaCCCCACGGg -3'
miRNA:   3'- -AUCGUGGUGGuuga-UGCc---GGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 53015 0.67 0.702638
Target:  5'- cAGCACCACCuggGCUcGCGGUCguggUCACGu -3'
miRNA:   3'- aUCGUGGUGGu--UGA-UGCCGG----GGUGCu -5'
11334 3' -57.5 NC_003084.1 + 80274 0.67 0.712863
Target:  5'- -uGCACCACCAugcgaccaaUGCGuGCuCCCAgCGAg -3'
miRNA:   3'- auCGUGGUGGUug-------AUGC-CG-GGGU-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.