miRNA display CGI


Results 41 - 53 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11334 3' -57.5 NC_003084.1 + 85267 0.69 0.598503
Target:  5'- -uGCAUCAUCAcACUGCGaagcGCCUCACGGg -3'
miRNA:   3'- auCGUGGUGGU-UGAUGC----CGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 86977 0.68 0.619388
Target:  5'- gAGCACCAUCGG-UugGGCCgCCAgUGAu -3'
miRNA:   3'- aUCGUGGUGGUUgAugCCGG-GGU-GCU- -5'
11334 3' -57.5 NC_003084.1 + 88717 0.69 0.571516
Target:  5'- cUGGUGCCGCUgaagcccaucaagauGACUAUGGCCUCguACGAu -3'
miRNA:   3'- -AUCGUGGUGG---------------UUGAUGCCGGGG--UGCU- -5'
11334 3' -57.5 NC_003084.1 + 88783 0.66 0.772363
Target:  5'- aAGCACCACC-GC-AUGGCcgacCCCACc- -3'
miRNA:   3'- aUCGUGGUGGuUGaUGCCG----GGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 91843 0.68 0.650769
Target:  5'- -uGCugCugCuGCUGCGGCUgCAUGGu -3'
miRNA:   3'- auCGugGugGuUGAUGCCGGgGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 93838 0.69 0.557102
Target:  5'- aUAGUGCCGCuCAACUugACGGCCaCCuccuccggACGAa -3'
miRNA:   3'- -AUCGUGGUG-GUUGA--UGCCGG-GG--------UGCU- -5'
11334 3' -57.5 NC_003084.1 + 96619 0.72 0.394778
Target:  5'- -cGUGgCGCUAGCUGCGGCUgCGCGAc -3'
miRNA:   3'- auCGUgGUGGUUGAUGCCGGgGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 97748 0.69 0.577721
Target:  5'- -cGCACCGcggauaacgguCCAACgu-GGCCUCACGAa -3'
miRNA:   3'- auCGUGGU-----------GGUUGaugCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 99249 0.71 0.467661
Target:  5'- gAGCcCCACUuggugaUGCGGCCCgACGAa -3'
miRNA:   3'- aUCGuGGUGGuug---AUGCCGGGgUGCU- -5'
11334 3' -57.5 NC_003084.1 + 99786 0.66 0.752949
Target:  5'- -cGCACCACCGAaccguCcGCCUCACGu -3'
miRNA:   3'- auCGUGGUGGUUgau--GcCGGGGUGCu -5'
11334 3' -57.5 NC_003084.1 + 101402 0.7 0.526594
Target:  5'- cAGC-UCACUAAUggucauuUGGCCCCACGAa -3'
miRNA:   3'- aUCGuGGUGGUUGau-----GCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 103857 0.66 0.74307
Target:  5'- gAGCuCCACCGA--GCGGUCgCCACa- -3'
miRNA:   3'- aUCGuGGUGGUUgaUGCCGG-GGUGcu -5'
11334 3' -57.5 NC_003084.1 + 105487 0.68 0.629849
Target:  5'- -uGuCACCGCaCGACUugGGCUCCAa-- -3'
miRNA:   3'- auC-GUGGUG-GUUGAugCCGGGGUgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.