miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11334 3' -57.5 NC_003084.1 + 68811 0.8 0.130311
Target:  5'- cUAGCACCACCGuuauCGGCCCCACc- -3'
miRNA:   3'- -AUCGUGGUGGUugauGCCGGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 68733 0.66 0.772363
Target:  5'- uUAGCACgACCGACacCGGgUCCACu- -3'
miRNA:   3'- -AUCGUGgUGGUUGauGCCgGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 68687 0.93 0.017849
Target:  5'- uUAGCACCACCGACaACGGCCCCACa- -3'
miRNA:   3'- -AUCGUGGUGGUUGaUGCCGGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 68573 0.88 0.038076
Target:  5'- cUAGCACCACaAACaACGGCCCCACGAa -3'
miRNA:   3'- -AUCGUGGUGgUUGaUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 68510 0.99 0.005922
Target:  5'- uUAGCACCACCAACgACGGCCCCACGAa -3'
miRNA:   3'- -AUCGUGGUGGUUGaUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 68428 1.06 0.001957
Target:  5'- uUGGCACCACCGACUACGGCCCCACGAa -3'
miRNA:   3'- -AUCGUGGUGGUUGAUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 68301 0.68 0.650769
Target:  5'- -uGCACCACCAAC--CGGuUCCCAUa- -3'
miRNA:   3'- auCGUGGUGGUUGauGCC-GGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 65592 0.66 0.772363
Target:  5'- cGGCA-CACCAACggUGGUCCCAUa- -3'
miRNA:   3'- aUCGUgGUGGUUGauGCCGGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 64323 0.69 0.59746
Target:  5'- cAGUugCucacguccacgaaGCCGugUACGGCCaCCACGu -3'
miRNA:   3'- aUCGugG-------------UGGUugAUGCCGG-GGUGCu -5'
11334 3' -57.5 NC_003084.1 + 53100 0.75 0.266279
Target:  5'- aUAGCACCACCGuACUGCGcagugcaCCCCACa- -3'
miRNA:   3'- -AUCGUGGUGGU-UGAUGCc------GGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 53015 0.67 0.702638
Target:  5'- cAGCACCACCuggGCUcGCGGUCguggUCACGu -3'
miRNA:   3'- aUCGUGGUGGu--UGA-UGCCGG----GGUGCu -5'
11334 3' -57.5 NC_003084.1 + 49668 0.68 0.619388
Target:  5'- uUGGCACCACCAccccagcucaccGgUACGGCUCaCAUa- -3'
miRNA:   3'- -AUCGUGGUGGU------------UgAUGCCGGG-GUGcu -5'
11334 3' -57.5 NC_003084.1 + 49579 0.87 0.045
Target:  5'- cUAGCACgACUAACgACGGCCCCGCGAa -3'
miRNA:   3'- -AUCGUGgUGGUUGaUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 49498 1.07 0.001698
Target:  5'- cUAGCACCACCAACUACGGCCCCACGAa -3'
miRNA:   3'- -AUCGUGGUGGUUGAUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 49413 1.07 0.00165
Target:  5'- uUAGCACCACCAACUACGGCCCCACGAa -3'
miRNA:   3'- -AUCGUGGUGGUUGAUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 49329 0.99 0.005922
Target:  5'- uUAGCACCACCAACgACGGCCCCACGAa -3'
miRNA:   3'- -AUCGUGGUGGUUGaUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 49244 1.07 0.00165
Target:  5'- uUAGCACCACCAACUACGGCCCCACGAa -3'
miRNA:   3'- -AUCGUGGUGGUUGAUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 48197 0.67 0.69235
Target:  5'- gUAGCACCACUccucgACGcacaCCCCACGGg -3'
miRNA:   3'- -AUCGUGGUGGuuga-UGCc---GGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 44165 0.67 0.68201
Target:  5'- gAGCGCCgcauugaugACCAGC-GCGGCUCCAa-- -3'
miRNA:   3'- aUCGUGG---------UGGUUGaUGCCGGGGUgcu -5'
11334 3' -57.5 NC_003084.1 + 39527 0.66 0.758823
Target:  5'- aAGCA-CACCGGaauggggcgauuaUACGGCCCCggGCGGu -3'
miRNA:   3'- aUCGUgGUGGUUg------------AUGCCGGGG--UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.