Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11334 | 3' | -57.5 | NC_003084.1 | + | 88717 | 0.69 | 0.571516 |
Target: 5'- cUGGUGCCGCUgaagcccaucaagauGACUAUGGCCUCguACGAu -3' miRNA: 3'- -AUCGUGGUGG---------------UUGAUGCCGGGG--UGCU- -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 64323 | 0.69 | 0.59746 |
Target: 5'- cAGUugCucacguccacgaaGCCGugUACGGCCaCCACGu -3' miRNA: 3'- aUCGugG-------------UGGUugAUGCCGG-GGUGCu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 88783 | 0.66 | 0.772363 |
Target: 5'- aAGCACCACC-GC-AUGGCcgacCCCACc- -3' miRNA: 3'- aUCGUGGUGGuUGaUGCCG----GGGUGcu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 103857 | 0.66 | 0.74307 |
Target: 5'- gAGCuCCACCGA--GCGGUCgCCACa- -3' miRNA: 3'- aUCGuGGUGGUUgaUGCCGG-GGUGcu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 37866 | 0.66 | 0.752949 |
Target: 5'- gAGC-CCAaCAuuugGCGGCCCCACa- -3' miRNA: 3'- aUCGuGGUgGUuga-UGCCGGGGUGcu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 9411 | 0.66 | 0.74307 |
Target: 5'- gUAGCACCACCuguagcCGaGCCCCAg-- -3' miRNA: 3'- -AUCGUGGUGGuugau-GC-CGGGGUgcu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 35247 | 0.66 | 0.723017 |
Target: 5'- gUAGCACCACuugagCAugUGCGGUgUCACc- -3' miRNA: 3'- -AUCGUGGUG-----GUugAUGCCGgGGUGcu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 74311 | 0.67 | 0.702638 |
Target: 5'- cGGCAUCACCAguucACUGuagcgcUGGCgCCACGu -3' miRNA: 3'- aUCGUGGUGGU----UGAU------GCCGgGGUGCu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 68301 | 0.68 | 0.650769 |
Target: 5'- -uGCACCACCAAC--CGGuUCCCAUa- -3' miRNA: 3'- auCGUGGUGGUUGauGCC-GGGGUGcu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 105487 | 0.68 | 0.629849 |
Target: 5'- -uGuCACCGCaCGACUugGGCUCCAa-- -3' miRNA: 3'- auC-GUGGUG-GUUGAugCCGGGGUgcu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 86977 | 0.68 | 0.619388 |
Target: 5'- gAGCACCAUCGG-UugGGCCgCCAgUGAu -3' miRNA: 3'- aUCGUGGUGGUUgAugCCGG-GGU-GCU- -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 85267 | 0.69 | 0.598503 |
Target: 5'- -uGCAUCAUCAcACUGCGaagcGCCUCACGGg -3' miRNA: 3'- auCGUGGUGGU-UGAUGC----CGGGGUGCU- -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 68428 | 1.06 | 0.001957 |
Target: 5'- uUGGCACCACCGACUACGGCCCCACGAa -3' miRNA: 3'- -AUCGUGGUGGUUGAUGCCGGGGUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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