miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11334 3' -57.5 NC_003084.1 + 36197 0.68 0.629849
Target:  5'- -cGCACCGCCAACU--GGUggUCCACGu -3'
miRNA:   3'- auCGUGGUGGUUGAugCCG--GGGUGCu -5'
11334 3' -57.5 NC_003084.1 + 105487 0.68 0.629849
Target:  5'- -uGuCACCGCaCGACUugGGCUCCAa-- -3'
miRNA:   3'- auC-GUGGUG-GUUGAugCCGGGGUgcu -5'
11334 3' -57.5 NC_003084.1 + 86977 0.68 0.619388
Target:  5'- gAGCACCAUCGG-UugGGCCgCCAgUGAu -3'
miRNA:   3'- aUCGUGGUGGUUgAugCCGG-GGU-GCU- -5'
11334 3' -57.5 NC_003084.1 + 49668 0.68 0.619388
Target:  5'- uUGGCACCACCAccccagcucaccGgUACGGCUCaCAUa- -3'
miRNA:   3'- -AUCGUGGUGGU------------UgAUGCCGGG-GUGcu -5'
11334 3' -57.5 NC_003084.1 + 85267 0.69 0.598503
Target:  5'- -uGCAUCAUCAcACUGCGaagcGCCUCACGGg -3'
miRNA:   3'- auCGUGGUGGU-UGAUGC----CGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 37996 0.69 0.598503
Target:  5'- gUGGgGCCGCCAAaugUugGGCUCCAUa- -3'
miRNA:   3'- -AUCgUGGUGGUUg--AugCCGGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 64323 0.69 0.59746
Target:  5'- cAGUugCucacguccacgaaGCCGugUACGGCCaCCACGu -3'
miRNA:   3'- aUCGugG-------------UGGUugAUGCCGG-GGUGCu -5'
11334 3' -57.5 NC_003084.1 + 97748 0.69 0.577721
Target:  5'- -cGCACCGcggauaacgguCCAACgu-GGCCUCACGAa -3'
miRNA:   3'- auCGUGGU-----------GGUUGaugCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 88717 0.69 0.571516
Target:  5'- cUGGUGCCGCUgaagcccaucaagauGACUAUGGCCUCguACGAu -3'
miRNA:   3'- -AUCGUGGUGG---------------UUGAUGCCGGGG--UGCU- -5'
11334 3' -57.5 NC_003084.1 + 93838 0.69 0.557102
Target:  5'- aUAGUGCCGCuCAACUugACGGCCaCCuccuccggACGAa -3'
miRNA:   3'- -AUCGUGGUG-GUUGA--UGCCGG-GG--------UGCU- -5'
11334 3' -57.5 NC_003084.1 + 77665 0.69 0.557102
Target:  5'- ---aACCGCCAcauugugguGCUAUGGUCCUACGGu -3'
miRNA:   3'- aucgUGGUGGU---------UGAUGCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 82188 0.69 0.54687
Target:  5'- uUAGCACCGCCAA--ACGGUucUCCAcCGAc -3'
miRNA:   3'- -AUCGUGGUGGUUgaUGCCG--GGGU-GCU- -5'
11334 3' -57.5 NC_003084.1 + 6903 0.7 0.536699
Target:  5'- aUGGaCugCGCCAACUgGCGGCCaCCAagGAg -3'
miRNA:   3'- -AUC-GugGUGGUUGA-UGCCGG-GGUg-CU- -5'
11334 3' -57.5 NC_003084.1 + 7015 0.7 0.536699
Target:  5'- cAGCACCACCGuaucccACcACGGUCCaCACu- -3'
miRNA:   3'- aUCGUGGUGGU------UGaUGCCGGG-GUGcu -5'
11334 3' -57.5 NC_003084.1 + 101402 0.7 0.526594
Target:  5'- cAGC-UCACUAAUggucauuUGGCCCCACGAa -3'
miRNA:   3'- aUCGuGGUGGUUGau-----GCCGGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 39107 0.7 0.513566
Target:  5'- cUGGCAgCACCGAUucaccccgagcucgUGCGGCccguuCCCGCGAc -3'
miRNA:   3'- -AUCGUgGUGGUUG--------------AUGCCG-----GGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 99249 0.71 0.467661
Target:  5'- gAGCcCCACUuggugaUGCGGCCCgACGAa -3'
miRNA:   3'- aUCGuGGUGGuug---AUGCCGGGgUGCU- -5'
11334 3' -57.5 NC_003084.1 + 37801 0.71 0.467661
Target:  5'- uUAGCACCGCaAAUgugGGCCCCACa- -3'
miRNA:   3'- -AUCGUGGUGgUUGaugCCGGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 31944 0.71 0.467661
Target:  5'- uUGGCACCACCGcggGCU-CGGCCgCAUu- -3'
miRNA:   3'- -AUCGUGGUGGU---UGAuGCCGGgGUGcu -5'
11334 3' -57.5 NC_003084.1 + 38071 0.71 0.458165
Target:  5'- aAGUucaACC-CCGACUGCGGCUCCAUu- -3'
miRNA:   3'- aUCG---UGGuGGUUGAUGCCGGGGUGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.