Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11334 | 5' | -46.5 | NC_003084.1 | + | 46270 | 0.66 | 0.999725 |
Target: 5'- -aCCGgucgagaGUGCGGUGCgUAACAUUcagCGa -3' miRNA: 3'- gaGGCa------UAUGCCACG-AUUGUAAa--GCa -5' |
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11334 | 5' | -46.5 | NC_003084.1 | + | 58378 | 0.66 | 0.999438 |
Target: 5'- aUCCGUA-AUGGUGUacgUAACGUUgUCGa -3' miRNA: 3'- gAGGCAUaUGCCACG---AUUGUAA-AGCa -5' |
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11334 | 5' | -46.5 | NC_003084.1 | + | 49372 | 0.69 | 0.994472 |
Target: 5'- -gCCGUAguugGUGGUGCUAGCAUUUa-- -3' miRNA: 3'- gaGGCAUa---UGCCACGAUUGUAAAgca -5' |
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11334 | 5' | -46.5 | NC_003084.1 | + | 49117 | 0.7 | 0.98998 |
Target: 5'- -gCCGUAguugGUGGUGCUAACAUUUaaaGUu -3' miRNA: 3'- gaGGCAUa---UGCCACGAUUGUAAAg--CA- -5' |
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11334 | 5' | -46.5 | NC_003084.1 | + | 49287 | 0.7 | 0.98998 |
Target: 5'- -gCCGUAguugGUGGUGCUAACAUUUaaaGUu -3' miRNA: 3'- gaGGCAUa---UGCCACGAUUGUAAAg--CA- -5' |
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11334 | 5' | -46.5 | NC_003084.1 | + | 82063 | 0.75 | 0.87622 |
Target: 5'- -aCCGUuugGCGGUGCUAAuuuugaugcacCGUUUCGUg -3' miRNA: 3'- gaGGCAua-UGCCACGAUU-----------GUAAAGCA- -5' |
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11334 | 5' | -46.5 | NC_003084.1 | + | 49209 | 1.08 | 0.019808 |
Target: 5'- cCUCCGUAUACGGUGCUAACAUUUCGUc -3' miRNA: 3'- -GAGGCAUAUGCCACGAUUGUAAAGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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