Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11335 | 3' | -53.2 | NC_003084.1 | + | 95351 | 0.68 | 0.866689 |
Target: 5'- -----gAGCACCACUg--GACGGCCg -3' miRNA: 3'- uuacaaUCGUGGUGGuugCUGCCGGg -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 7015 | 0.68 | 0.833517 |
Target: 5'- -----cAGCACCACCGuaucccACcACGGUCCa -3' miRNA: 3'- uuacaaUCGUGGUGGU------UGcUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 1294 | 0.68 | 0.842133 |
Target: 5'- ------cGCGuCCACCAcucuaGCGugGGCCUg -3' miRNA: 3'- uuacaauCGU-GGUGGU-----UGCugCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 61003 | 0.68 | 0.842133 |
Target: 5'- -----aAGCACCACCgAACGACcgcuuguaccaGGCUCu -3' miRNA: 3'- uuacaaUCGUGGUGG-UUGCUG-----------CCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 63732 | 0.68 | 0.858727 |
Target: 5'- --cGUUuccAGCACCAgCAGCGGauGCCg -3' miRNA: 3'- uuaCAA---UCGUGGUgGUUGCUgcCGGg -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 46405 | 0.68 | 0.833517 |
Target: 5'- gAAUGUUAcGCACCGCacucuCGAcCGGUCUa -3' miRNA: 3'- -UUACAAU-CGUGGUGguu--GCU-GCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 102200 | 0.67 | 0.881909 |
Target: 5'- -----cGGCACCACCGugGACacacgcuauggGGCUa -3' miRNA: 3'- uuacaaUCGUGGUGGUugCUG-----------CCGGg -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 46969 | 0.67 | 0.881909 |
Target: 5'- --cGUUAaGCAgCAgUCAACGugGGCaCCg -3' miRNA: 3'- uuaCAAU-CGUgGU-GGUUGCugCCG-GG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 15758 | 0.67 | 0.881909 |
Target: 5'- cAUGUU-GCGCCACCugAACG-CGGacaCCa -3' miRNA: 3'- uUACAAuCGUGGUGG--UUGCuGCCg--GG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 51457 | 0.67 | 0.889155 |
Target: 5'- -----cAGCACCGguccaccuUCAACcACGGCCCa -3' miRNA: 3'- uuacaaUCGUGGU--------GGUUGcUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 95103 | 0.67 | 0.909379 |
Target: 5'- uGGUGUgcacGGCuuugGCUACCuguACGGCGGCUg -3' miRNA: 3'- -UUACAa---UCG----UGGUGGu--UGCUGCCGGg -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 20812 | 0.67 | 0.889155 |
Target: 5'- -----cGGCACgCAaacuCCAGCGcccaGCGGCCCa -3' miRNA: 3'- uuacaaUCGUG-GU----GGUUGC----UGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 91233 | 0.67 | 0.896151 |
Target: 5'- -----aAGCACggaCACCAACGuguGGCCCu -3' miRNA: 3'- uuacaaUCGUG---GUGGUUGCug-CCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 75319 | 0.67 | 0.889155 |
Target: 5'- gGGUGUUGcccgcGUACaugGCCAACGugGGCUUc -3' miRNA: 3'- -UUACAAU-----CGUGg--UGGUUGCugCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 88777 | 0.66 | 0.927268 |
Target: 5'- --aGUUccaAGCACCACCG-C-AUGGCCg -3' miRNA: 3'- uuaCAA---UCGUGGUGGUuGcUGCCGGg -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 105639 | 0.66 | 0.921568 |
Target: 5'- ---uUUAGCAUCACCAGu--CGGCCg -3' miRNA: 3'- uuacAAUCGUGGUGGUUgcuGCCGGg -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 1109 | 0.66 | 0.921568 |
Target: 5'- ---uUUAGCAUCACCAGu--CGGCCg -3' miRNA: 3'- uuacAAUCGUGGUGGUUgcuGCCGGg -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 65592 | 0.66 | 0.937878 |
Target: 5'- -----cGGCA-CACCAACGGUGGUCCc -3' miRNA: 3'- uuacaaUCGUgGUGGUUGCUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 68293 | 0.66 | 0.937878 |
Target: 5'- cGAUGaaguGCACCACCAAC--CGGuuCCCa -3' miRNA: 3'- -UUACaau-CGUGGUGGUUGcuGCC--GGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 75443 | 0.66 | 0.937878 |
Target: 5'- aAAUGUUGGguCCACUAGagUGGgGGCgCa -3' miRNA: 3'- -UUACAAUCguGGUGGUU--GCUgCCGgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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