miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11335 3' -53.2 NC_003084.1 + 1294 0.68 0.842133
Target:  5'- ------cGCGuCCACCAcucuaGCGugGGCCUg -3'
miRNA:   3'- uuacaauCGU-GGUGGU-----UGCugCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 77990 0.68 0.848875
Target:  5'- cAAUGUUgagAGUACCGguCCAACGcuuuuggguaacCGGCCCg -3'
miRNA:   3'- -UUACAA---UCGUGGU--GGUUGCu-----------GCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 48202 0.68 0.858727
Target:  5'- cGGUGgUAGCACCACUccuCGACGcacacCCCa -3'
miRNA:   3'- -UUACaAUCGUGGUGGuu-GCUGCc----GGG- -5'
11335 3' -53.2 NC_003084.1 + 63732 0.68 0.858727
Target:  5'- --cGUUuccAGCACCAgCAGCGGauGCCg -3'
miRNA:   3'- uuaCAA---UCGUGGUgGUUGCUgcCGGg -5'
11335 3' -53.2 NC_003084.1 + 95351 0.68 0.866689
Target:  5'- -----gAGCACCACUg--GACGGCCg -3'
miRNA:   3'- uuacaaUCGUGGUGGuugCUGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 32649 0.68 0.874418
Target:  5'- -cUGUacccauCACCACCGaacAUGACGGCUCg -3'
miRNA:   3'- uuACAauc---GUGGUGGU---UGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 46969 0.67 0.881909
Target:  5'- --cGUUAaGCAgCAgUCAACGugGGCaCCg -3'
miRNA:   3'- uuaCAAU-CGUgGU-GGUUGCugCCG-GG- -5'
11335 3' -53.2 NC_003084.1 + 102200 0.67 0.881909
Target:  5'- -----cGGCACCACCGugGACacacgcuauggGGCUa -3'
miRNA:   3'- uuacaaUCGUGGUGGUugCUG-----------CCGGg -5'
11335 3' -53.2 NC_003084.1 + 15758 0.67 0.881909
Target:  5'- cAUGUU-GCGCCACCugAACG-CGGacaCCa -3'
miRNA:   3'- uUACAAuCGUGGUGG--UUGCuGCCg--GG- -5'
11335 3' -53.2 NC_003084.1 + 51457 0.67 0.889155
Target:  5'- -----cAGCACCGguccaccuUCAACcACGGCCCa -3'
miRNA:   3'- uuacaaUCGUGGU--------GGUUGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 75319 0.67 0.889155
Target:  5'- gGGUGUUGcccgcGUACaugGCCAACGugGGCUUc -3'
miRNA:   3'- -UUACAAU-----CGUGg--UGGUUGCugCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 20812 0.67 0.889155
Target:  5'- -----cGGCACgCAaacuCCAGCGcccaGCGGCCCa -3'
miRNA:   3'- uuacaaUCGUG-GU----GGUUGC----UGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 91233 0.67 0.896151
Target:  5'- -----aAGCACggaCACCAACGuguGGCCCu -3'
miRNA:   3'- uuacaaUCGUG---GUGGUUGCug-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 95103 0.67 0.909379
Target:  5'- uGGUGUgcacGGCuuugGCUACCuguACGGCGGCUg -3'
miRNA:   3'- -UUACAa---UCG----UGGUGGu--UGCUGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 39107 0.66 0.914994
Target:  5'- ----cUGGCAgCACCGAuucaccccgagcuCGuGCGGCCCg -3'
miRNA:   3'- uuacaAUCGUgGUGGUU-------------GC-UGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 105639 0.66 0.921568
Target:  5'- ---uUUAGCAUCACCAGu--CGGCCg -3'
miRNA:   3'- uuacAAUCGUGGUGGUUgcuGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 1109 0.66 0.921568
Target:  5'- ---uUUAGCAUCACCAGu--CGGCCg -3'
miRNA:   3'- uuacAAUCGUGGUGGUUgcuGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 104677 0.66 0.921568
Target:  5'- ------uGCACCACCAGCGcCGaGUUCa -3'
miRNA:   3'- uuacaauCGUGGUGGUUGCuGC-CGGG- -5'
11335 3' -53.2 NC_003084.1 + 102997 0.66 0.921568
Target:  5'- cAAUGUgAGCACCgacagcACCAaaaACGuuguccaGGCCCa -3'
miRNA:   3'- -UUACAaUCGUGG------UGGU---UGCug-----CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 96502 0.66 0.927268
Target:  5'- ----cUAGCGCCACgAACGcucGCCCa -3'
miRNA:   3'- uuacaAUCGUGGUGgUUGCugcCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.